Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase
Overview
| Protein Change | Nucleotide Change | Mechanism | Organism | Resistance To | Database | Validation Status |
|---|---|---|---|---|---|---|
| L102S | - | Acinetobacter baumannii | ciprofloxacingentamicin|amikacingentamicin | Reslit | Candidate | |
| E167A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| F171A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| Y166A | - | - | E. coli | kanamycin | Reslit | Candidate |
| P155A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| P157A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| N159A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| L160A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| I163A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| K168A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| G170A | - | - | E. coli | kanamycin|amikacin | Reslit | Candidate |
| Q106L | - | - | Salmonella enterica | aminoglycosides|fluoroquinolones | Reslit | Candidate |
| L107S | - | - | Salmonella enterica | aminoglycosides|fluoroquinolones | Reslit | Candidate |
| W92R | - | - | Salmonella enterica | fluoroquinolones | Reslit | Candidate |
| D169Y | - | - | Salmonella enterica | fluoroquinolones | Reslit | Candidate |
| W102R | - | confers additional resistance against piperazine-containing fluoroquinolones | Escherichia coli, Klebsiella, Escherichia, E. coli | fluoroquinolonesciprofloxacin|kanamycin | Reslit | Candidate |
| S117L | - | increased resistance to amikacin and reduced resistance to gentamicin | Escherichia coli, Klebsiella, Escherichia, E. coli | aminoglycosidesciprofloxacin|kanamycin | Reslit | Candidate |
| D179Y | - | confers additional resistance against piperazine-containing fluoroquinolones | Escherichia coli, Klebsiella, Escherichia, E. coli | fluoroquinolonesgemifloxacin|ciprofloxacin|kanamycin | Reslit | Candidate |
| Q101L | - | - | amikacin | Reslit | Candidate | |
| L55Q | - | - | isepamicin | Reslit | Candidate | |
| S83N | - | - | isepamicin | Reslit | Candidate | |
| S7T | - | - | isepamicin | Reslit | Candidate |
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| aac(6')-Ib | Card DatabaseReference Gene CatalogResFinder DatabaseReslit | 325 | TOBRAMYCIN, KANAMYCIN +14 | Pseudomonas aeruginosa +135 | United States, Toronto, Canada|Vancouver, Canada|India, Japan, Brazil, India, Argentina, Daejeon, Korea, Global, Global|India|Spain, Athens, Greece, France, China, Madagascar, Taiwan|India|Morocco|Hong Kong, United States|U.S.|France|Korea, Korea, East Africa|Kenya, The Netherlands, Germany, Germany|Spain|France|China|United States|Argentina|Canada|Colombia|Croatia|Brazil|Greece|Italy|Israel|India|Portugal|Philippines|Romania|Taiwan, Algeria, Canadian high Arctic, Iran, Netherlands, Venezuela, Europe, United States|New York|Florida|Illinois|Gaza|Colombia|South America|Mediterranean region, South Korea, Egypt, United Kingdom|Ireland, Kenya, England, Latin America, Spain, Europe|seafood, SouthWest Nigeria, United States|coastal wetlands, Hong Kong, Cameroon, Scotland, France|China|Germany|Brazil|Denmark|Japan, St. Louis, MO, USA, Ghana, South-Kivu Province, Democratic Republic of Congo, Belgium, Norway, Colombia, Amazon River|Kalamas River|Cam River|Cambridge|Amazon River Plume, Saudi Arabia, Port-Harcourt, Nigeria, Greece, Antarctica, Alberta, Canada, H1 Hospital, Italy, Poland, Ethiopia, Portugal, Nigeria, Global|global|Turkey, Mexico, Europe|Spain|Hungary|Germany|France|Belgium|Poland|United Kingdom|Denmark, Malaysia, Vietnam|Southeast Asia, California|Europe|North America|Republic of Congo, Netherlands|Greece|Romania, South Africa, Brasília, Brazil, Philippines, Cleveland Clinic, OH, England|south-central England, Poland|Ukraine, Qatar, Uganda|Kenya, India|United States, Europe|Greece, Europe|Netherlands, Italy|Spain|Belgium|Thailand|Madagascar|Sweden|Vietnam|Canada, Japan|France|United Kingdom|North America|South America|Europe|Asia/Oceania|Africa, Kuwait, Europe|EU|China|Portugal|Germany, Canada|China|Iran|Poland|United States|Turkey|South Korea|Hong Kong|India|Germany|France|Italy|Spain|Japan|Brazil|Australia|Russia|Mexico|Egypt|Saudi Arabia|South Africa|New Zealand|Sweden|Norway|Denmark|Finland|Iceland|Switzerland|Austria|Belgium|Netherlands|Luxembourg|Portugal|Greece|Czech Republic|Hungary|Romania|Bulgaria|Serbia|Croatia|Slovenia|Slovakia|Ukraine|Israel|Jordan|Lebanon|Syria|Iraq|Afghanistan|Pakistan|Bangladesh|Myanmar|Vietnam|Thailand|Malaysia|Indonesia|Philippines|Singapore|Brunei|Cambodia|Laos|Mongolia|North Korea|Taiwan|Macau|Macao|Taipei|Shanghai|Beijing|Guangzhou|Shenzhen|Chengdu|Chongqing|Wuhan|Hangzhou|Nanjing|Xi'an|Tianjin|Harbin|Changchun|Shenyang|Dalian|Qingdao|Ningbo|Wenzhou|Xiamen|Fuzhou|Quanzhou|Zhengzhou|Luoyang|Kaifeng|Zhuhai|Shantou|Zhongshan|Huizhou|Meizhou|Shaoguan|Heyuan|Zhanjiang|Yangjiang|Maoming|Zhaoqing|Jiangmen|Yangzhou|Nantong|Suzhou|Wuxi|Changzhou|Zhenjiang|Taizhou|Lishui|Huzhou|Jiaxing|Shaoxing|Haining|Anqing|Hefei|Huangshan|Wuhu|Ma'anshan|Chizhou|Tongling|Anhui|Hubei|Hunan|Guangxi|Yunnan|Guizhou|Sichuan|Shaanxi|Gansu|Qinghai|Tibet|Inner Mongolia|Xinjiang|Ningxia|Henan|Shanxi|Hebei|Shandong|Jiangsu|Zhejiang|Fujian|Guangdong|Hainan|Jiangxi, Europe|USA|Portugal|Germany|Australia|China|India|Pakistan|Sweden|Colorado, Thailand, Romania, Zhejiang, China|China, Portugal|Antarctic|South Shetland Islands|North Adriatic Sea|Bohai Sea|Adriatic Sea|Pacific Ocean|Baltic Sea, Bangladesh, swine manure, Finland, Russia|Switzerland|Italy|USA|Norway|Spain|Ghana, Global|Guinea|Austria|Vietnam|China|Spain|Canada|Hong Kong|Malaysia|Germany|South Africa|Vancouver|Vienna, Pakistan|Karachi, Pakistan, Alexandria, Egypt, Shenzhen, China|China, Brazil|Belgium, South Africa|Spain|Netherlands|Switzerland|India|China|Germany|Russia|USA|Australia|Other countries, Tunisia, Central Adriatic|Central Adriatic Sea, Iraq, Jordan, Europe|United States|Asia|Africa|Australia|Bangladesh, Shanghai, China, Europe|Asia|North America, Slovak Republic, UK, Malawi, Australia, Croatia, clinical|environmental, Latvia, Spain|Portugal|Germany|UK|Switzerland|Thailand|Italy, Shenzhen, China, Uruguay, USA|China|Japan|Spain|United Kingdom|Germany|France|South Korea|Netherlands|Viet Nam|Laos|Canada|Czech Republic|Argentina|Brazil|Belgium|Denmark|Iran|Australia|Croatia|Ghana|Mexico|Missing, Europe|Asia|South America|Africa|Germany|Vietnam|USA|Ecuador|China, Peru, Europe|Africa|North America|South America|Asia|Oceania, Southern Thailand, Northern Italy, Oman, Myanmar, Argentina|Canada|Germany|United States, Hungary, Southern India|India, Shandong Province, Tianjin|Southern Karnataka, Mayurbhanj, Odisha, India|India, Sweden, Türkiye | 1988, 1991, 1993, 1998, 1999, 2001, 2002, 2003, 2004, 2005, 2006, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025, 2026 | CP032569.2 | AYF71935.1 |
| AAC(6')-Ib | Card Database | 1 | - | Klebsiella pneumoniae | - | - | JQ808129.1 | AFJ11384.1 |
| AAC(6')-Ib3 | Card DatabaseReference Gene CatalogReslit | 33 | amikacin, gentamicin +6 | Acinetobacter baumannii +15 | Japan, Thailand|Nepal, South Korea, Europe, China, Colombia, Canada, Kuwait, Italy, Pakistan, Bangladesh, Greece, Egypt, UK, Romania, Spain, Nigeria, Egypt|Tunisia|Middle East|North Africa | 1998, 2020, 2021, 2022, 2023, 2024, 2025 | FJ854362.1 | ACS44715.1 |
| AAC(6')-Ib4 | Card DatabaseReference Gene CatalogReslit | 13 | GENTAMICIN, tobramycin +4 | Acinetobacter baumannii +8 | Philippines, China, Australia|Melbourne, Australia, Vietnam, Egypt, Guangdong, China, United States, Japan, Africa|Americas|Asia|Europe|Oceania | 1992, 2021, 2022, 2023, 2024, 2025 | AF445082.1 | AAL38577.1 |
| AAC(6')-Ib-cr1 | Card Database | 1 | - | Stenotrophomonas maltophilia | - | - | NG_052213.1 | WP_071846215.1 |
| AAC(6')-Ib-SK | Card Database | 1 | - | Streptomyces kanamyceticus | - | - | AB164230.1 | BAD11815.1 |
| aacA1b/orfG | Reslit | 1 | kanamycin, tobramycin +2 | Escherichia coli | - | 2001 | AF205943 | - |
| aac(6')-Ib3 | ResFinder Database | 1 | TOBRAMYCIN, AMIKACIN | Pseudomonas aeruginosa | - | 1992 | X60321 | - |
| aac(6')-1b | Reslit | 2 | gentamicin, kanamycin +2 | Escherichia coli +2 | France, Korea | 2004, 2022 | AY013478 | - |
| aac6'-Ib | Reslit | 2 | aminoglycosides, gentamicin +1 | Acinetobacter baumannii +1 | France, China | 2006, 2021 | CT025832|CT025833|AY859527 | - |
| aac(6')Ib | Reslit | 2 | gentamicin, tobramycin +2 | Escherichia coli +1 | Madrid, Spain, Shandong Province, China | 2006, 2023 | - | - |
| aac(6')-Ib-Hangzhou | ResFinder DatabaseReslit | 3 | TOBRAMYCIN, AMIKACIN +4 | Acinetobacter baumannii +2 | Egypt, Spain | 2009, 2023, 2025 | FJ503047 | - |
| aac61b | Reslit | 1 | gentamicin | Aeromonas punctata | Singapore|Colombia|Guyana|Brazil|Manaos | 2009 | FM957852|FM957853|FM957854|FM957855|FM957856|FM957857|FM957858|FM957859|FM957860|FM957861|FM957862|FM957863|FM957864|FM957865|FM957866|FM957867|FM957868|FM957869|FM957870|FM957871|FM957872|FM957873|FM957874|FM957875|FM957876|FM957877|FM957878|FM957879|FM957880|FM957881|FM957882|FM957883|FM957884|FM957885|FM957886|FM957887 | - |
| aac (6′)-Ib | Reslit | 2 | gentamicin, tobramycin +2 | Acinetobacter baumannii +2 | Northern China | 2014, 2022 | ADE18890.1|AAS46844.1|AEN02824.1|AEN02817.1|ACV88636.1|AEL87577.1|AEQ55231.1|ABQ14376.1|ADN79104.1|WP_010157942.1|ACI29961.1|AEQ39590.1|AAM22276.1|WP_019405145.1|AEW28787.1|ABY81267.1|AAF74292.1|AFU53026.1|ADE18896.1|AEN02826.1|YP_252228.1|WP_009348253.1|WP_017896153.1|WP_008157744.1|CAJ47138.2|ADU15837.1|AEK80394.1|ABS72351.1|AAP03063.1|AEG79634.1|ABG46354.1|AEZ49563.1|AEZ49551.1|ABG46356.1|ABW06480.1|AAB22638.1|BAD16611.1|YP_003717483.1|ABN09669.1|AAA25680.1|WP_006234103.1|AAS45464.1|WP_002304968.1|WP_001028140.1|WP_001028143.1|WP_010729367.1|AAX82584.1|WP_002417297.1|AFR11868.1|AFM29914.1|AAT77696.1|3SG8_A|3N4T_A|ACJ47203.1|ACA48663.14|AAA16194.1|WP_001642188.1 | - |
| aac (6')-Ib | Reslit | 4 | aminoglycosides, gentamicin | Enterobacter cloacae +4 | France|Europe, Egypt, China, Saudi Arabia | 2015, 2021, 2022, 2025 | PRJNA1192313 | - |
| aac6Ib | Reslit | 1 | gentamicin, tobramycin | Escherichia coli | Saudi Arabia | 2017 | - | - |
| aac-(6')-Ib | Reslit | 1 | aminoglycosides | Escherichia coli | China | 2017 | - | - |
| aac(6)Ib | Reslit | 1 | gentamicin | Escherichia coli | Scotland | 2018 | PRJEB12513 | - |
| aac6-Ib | Reslit | 2 | aminoglycosides, gentamicin +1 | Klebsiella pneumoniae +1 | Italy, Algeria | 2020, 2021 | PRJNA431724 | - |
| aac-6'-Ib | Reslit | 1 | gentamicin, tobramycin +1 | Escherichia coli | Chicago|Illinois | 2020 | - | - |
| aac(6')-Ib-D179Y | Reslit | 1 | amikacin | Klebsiella pneumoniae | - | 2020 | - | - |
| aac6'-1b | Reslit | 1 | aminoglycosides | Acinetobacter baumannii 17 | - | 2021 | CRA003099 | - |
| aac(6′)-1b′ | Reslit | 1 | aminoglycosides | Acinetobacter baumannii | Egypt | 2021 | NZ_CP009257.1 | - |
| aac (6')-Ib' | Reslit | 2 | aminoglycosides | Acinetobacter baumannii | Egypt, China | 2021, 2024 | MZ224611.1|CP071319.1 | - |
| aac(6')-Ib-cr.V2 | Reslit | 1 | aminoglycosides | Klebsiella pneumoniae | United States | 2022 | NC_006625.1|NCBI123456|NCBI789012 | - |
| aac 6-Ib4 | Reslit | 1 | streptomycin | Escherichia coli | Southeast Nigeria | 2022 | PRJEB43719 | - |
| aac 6-Ib3 | Reslit | 1 | streptomycin | Escherichia coli | Southeast Nigeria | 2022 | PRJEB43719 | - |
| aac (6')-Ib3 | Reslit | 1 | aminoglycosides | Salmonella enterica subsp. enterica serovar Heidelberg | Ontario, Canada | 2022 | PRJNA845137 | - |
| aac(6′)-Ib-AKT | Reslit | 1 | kanamycin, gentamicin | Escherichia coli | China | 2023 | PRJNA911045 | - |
| aac(6′)-Ib-D181Y | Reslit | 1 | kanamycin, gentamicin | Escherichia coli | China | 2023 | PRJNA911045 | - |
| AAC6-Ib-Suzhou | Reslit | 1 | aminoglycosides | Escherichia coli | - | 2023 | PRJNA883557 | - |
| aac(6')-IB-Su | Reslit | 1 | tobramycin | Escherichia coli +1 | UK | 2024 | - | - |
| aac (6’)-Ib | Reslit | 1 | aminoglycosides | Klebsiella pneumoniae | Egypt | 2024 | JAWIZL000000000 | - |
| aac(6')-Ib-AKT | Reslit | 1 | aminoglycosides | Klebsiella pneumoniae | Ecuador | 2024 | NC_016845.1 | - |
| aac(6')-Ib-cr_1 | Reslit | 1 | aminoglycosides | Klebsiella pneumoniae | Brazil | 2025 | JBDLPA000000000|SAMN41189574 | - |
| AAC (6′)-Ib | Reslit | 1 | aminoglycosides | Klebsiella pneumoniae +1 | - | 2025 | - | - |
Structure of In31, a blaIMP-containing Pseudomonas aeruginosa integron phyletically related to In5, which carries an unusual array of gene cassettes.
Effects of F171 mutations in the 6'-N-acetyltransferase type Ib [AAC(6')-Ib] enzyme on susceptibility to aminoglycosides.
Activities of tobramycin and six other antibiotics against Pseudomonas aeruginosa isolates from patients with cystic fibrosis.
The study identified aminoglycoside-modifying enzymes aac(6')-Ib and ant(2")-Ia as contributors to tobramycin resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patients.
Characterization of In53, a class 1 plasmid- and composite transposon-located integron of Escherichia coli which carries an unusual array of gene cassettes.
The study characterizes In53, a unique class 1 integron in Escherichia coli that carries multiple antibiotic resistance gene cassettes, including aadB, arr-2, cmlA5, qacI, aacA1b/orfG, oxa10, and aadA1, each contributing to resistance against various antibiotics.
Systematic Analysis of a Conserved Region of the Aminoglycoside 6′-N-Acetyltransferase Type Ib
The study identifies key residues in the aac(6')-Ib gene that are crucial for resistance to kanamycin and amikacin, highlighting the importance of motif B in substrate specificity and enzymatic activity.
Complete nucleotide sequence of Klebsiella pneumoniae multiresistance plasmid pJHCMW1.
The study characterizes the multiresistance plasmid pJHCMW1 from Klebsiella pneumoniae, identifying four antibiotic resistance genes: aac(6')-Ib, aadA1, blaOXA-9, and blaTEM-1.
Characterization of Tn1546 in vancomycin-resistant Enterococcus faecium isolated from canine urinary tract infections: evidence of gene exchange between human and animal enterococci.
The study identified the presence of Tn1546 (vanA) responsible for high-level vancomycin resistance and Tn5281 carrying aac(6')-Ib, conferring high-level aminoglycoside resistance in a vancomycin-resistant Enterococcus faecium isolate from a canine urinary tract infection.
Molecular characterization of a new class 3 integron in Klebsiella pneumoniae.
The Aminoglycoside 6′-N-Acetyltransferase Type Ib Encoded by Tn1331 Is Evenly Distributed within the Cell's Cytoplasm.
The study characterizes the aac(6′)-Ib gene, which encodes an aminoglycoside 6′-N-acetyltransferase that confers resistance to kanamycin, amikacin, and tobramycin. The gene is part of the Tn1331 transposon and is localized in the cytoplasm of E. coli.
A new example of physical linkage between Tn1 and Tn21: the antibiotic multiple-resistance region of plasmid pCFF04 encoding extended-spectrum beta-lactamase TEM-3.
Nucleotide sequence of aminoglycoside 6'-N-acetyltransferase [AAC(6')] determinant from Serratia sp. 45.
Nucleotide sequence of aminoglycoside 6'-N-acetyltransferase [AAC(6')] determinant from Serratia sp. 45.
Inhibition of Aminoglycoside 6′-N-Acetyltransferase Type Ib-Mediated Amikacin Resistance by Antisense Oligodeoxynucleotides.
The study identifies the aac(6')-Ib gene as a key mediator of amikacin resistance and demonstrates that antisense oligodeoxynucleotides can inhibit its expression, reducing resistance.
Emergence and spread of three clonally related virulent isolates of CTX-M-15-producing Escherichia coli with variable resistance to aminoglycosides and tetracycline in a French geriatric hospital.
The study identified three clonally related CTX-M-15-producing Escherichia coli isolates with varying resistance to aminoglycosides and tetracycline. The isolates exhibited resistance to fluoroquinolones due to mutations in gyrA and parC genes, and resistance to aminoglycosides due to the aac(6')-1b gene. The CTX-M-15 β-lactamase conferred resistance to various β-lactam antibiotics.
Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada.
The study reports the complete nucleotide sequence of a 92-kilobase plasmid, pC15-1a, which harbors the CTX-M-15 extended-spectrum beta-lactamase, along with other resistance genes such as blaOXA-1, blaTEM-1, aac(6')-Ib, aac(3)-II, and tetA. These genes contribute to multidrug resistance in Escherichia coli strains associated with an outbreak in long-term-care facilities in Toronto, Canada.
Metallo-β-Lactamase-Producing Gram-Negative Bacilli: Laboratory-Based Surveillance in Cooperation with 13 Clinical Laboratories in the Kinki Region of Japan.
The study identified metallo-β-lactamase (MBL) genes, including blaIMP-1, blaIMP-2, and blaVIM-2, in various gram-negative bacilli, highlighting the widespread distribution of MBL-producing organisms in the Kinki region of Japan.
Integron Carrying a Novel Metallo-β-Lactamase Gene, blaIMP-16, and a Fused Form of Aminoglycoside-Resistant Gene aac(6′)-30/aac(6′)-Ib′: report from the SENTRY Antimicrobial Surveillance Program.
The study identifies a novel metallo-beta-lactamase gene, blaIMP-16, and a fused form of aminoglycoside-resistant gene aac(6′)-30/aac(6′)-Ib′ in a Pseudomonas aeruginosa strain. blaIMP-16 confers resistance to carbapenems and cephalosporins, while the fused aac(6′)-30/aac(6′)-Ib′ gene confers resistance to multiple aminoglycosides.
Mutagenesis analysis of a conserved region involved in acetyl coenzyme A binding in the aminoglycoside 6'-N-acetyltransferase type Ib encoded by plasmid pJHCMW1., Primary structure of an aminoglycoside 6'-N-acetyltransferase AAC(6')-4, fused in vivo with the signal peptide of the Tn3-encoded beta-lactamase.
Incidence of class 1 integrons in multiple antibiotic-resistant Gram-negative copiotrophic bacteria from the River Torsa in India
The study identified various gene cassettes within class 1 integrons in multiple antibiotic-resistant Gram-negative bacteria from the River Torsa in India, including dfrA1, dfrA5, dfrA7, dfrA12, dfrA17, aac(6')-Ib, aadA1, aadA6, and a novel ORF with homology to dfrA1.
Comparative genomics of multidrug resistance in Acinetobacter baumannii.
The study identifies numerous resistance genes in the multidrug-resistant Acinetobacter baumannii strain AYE, including beta-lactamases, aminoglycoside-modifying enzymes, tetracycline resistance genes, and others, highlighting the complexity of its resistance mechanisms.
Spread of Escherichia coli Strains with High-Level Cefotaxime and Ceftazidime Resistance between the Community, Long-Term Care Facilities, and Hospital Institutions.
The study identifies the spread of Escherichia coli strains with high-level resistance to cefotaxime and ceftazidime, primarily due to the presence of extended-spectrum beta-lactamases (ESBLs) such as CTX-M-15, CTX-M-14, and CTX-M-32. Additionally, other resistance genes like tetA, dfrA14, dfrA17, sul1, sul2, aac(6')Ib, and aac(3)IIb were found to contribute to multidrug resistance.
Klebsiella pneumoniae multiresistance plasmid pMET1: similarity with the Yersinia pestis plasmid pCRY and integrative conjugative elements.
The study characterizes the multiresistance plasmid pMET1 from Klebsiella pneumoniae, identifying several AMR genes including bla TEM-1, aac(6')-Ib, aadA1, and bla OXA-9, which confer resistance to beta-lactams and aminoglycosides.
Mechanistic and structural analysis of aminoglycoside N-acetyltransferase AAC(6')-Ib and its bifunctional, fluoroquinolone-active AAC(6')-Ib-cr variant.
The study characterizes the aminoglycoside N-acetyltransferase AAC(6')-Ib and its bifunctional variant AAC(6')-Ib-cr, which confers resistance to aminoglycosides and fluoroquinolones. The structural and kinetic analyses reveal the mechanism of action and the impact of specific mutations on substrate specificity.
Synonymous genes explore different evolutionary landscapes.
The study demonstrates that synonymous gene modifications can lead to distinct evolutionary paths and the identification of novel resistance mutations in the aac(6')-Ib gene, enhancing the understanding of protein evolvability and resistance mechanisms.
Antibiotic-resistance profile in environmental bacteria isolated from penicillin production wastewater treatment plant and the receiving river.
Molecular Diagnostic Technologies in Clinical Microbiology
The paper describes a DNA microarray for genotyping antibiotic resistance in Pseudomonas aeruginosa, identifying several resistance genes and mutations associated with various antibiotics.
Inhibition of aac(6′)-Ib-mediated amikacin resistance by nuclease-resistant external guide sequences in bacteria.
The study identifies aac(6')-Ib as a gene responsible for amikacin resistance and demonstrates that nuclease-resistant external guide sequences can inhibit its expression, thereby reducing resistance.
A novel aminoglycoside-modifying enzyme gene aac(6')-Ib in a pandrug-resistant Acinetobacter baumannii strain.
High prevalence of multidrug-tolerant bacteria and associated antimicrobial resistance genes isolated from ornamental fish and their carriage water.
The study identified a high prevalence of multidrug-tolerant bacteria and various antimicrobial resistance genes in ornamental fish and their carriage water, highlighting the potential risk of resistance gene spread through the aquatic environment.
Cloning, sequencing, and use as a molecular probe of a gene encoding an aminoglycoside 6'-N-acetyltransferase of broad substrate profile.
The study reports the cloning and sequencing of a gene encoding an aminoglycoside 6'-N-acetyltransferase capable of modifying amikacin, providing insights into aminoglycoside resistance mechanisms.
Aminoglycoside modifying enzymes.
The paper discusses various aminoglycoside modifying enzymes, particularly focusing on AAC(6')-Ib, AAC(6')-Ib-cr, and AAC(6')-Ib 11, which confer resistance to aminoglycosides like amikacin and gentamicin, and in some cases, quinolones.
Antimicrobial resistance determinants in imipenem-nonsusceptible Acinetobacter calcoaceticus-baumannii complex isolated in Daejeon, Korea.
The study identified various antimicrobial resistance genes including blaOXA-51-like, blaOXA-23, blaIMP-1, blaVIM-2, aac(6')-Ib, aph(3')-Ia, aph(3')-VI, and armA in imipenem-nonsusceptible Acinetobacter calcoaceticus-baumannii complex isolates. Additionally, mutations in gyrA and parC were found to confer fluoroquinolone resistance.
Antimicrobial Resistance in Bacteria: Mechanisms and Current Challenges
This paper characterizes several beta-lactamases, including TEM-1, SHV-1, CTX-M-15, and NDM-1, which confer resistance to various beta-lactam antibiotics. It also identifies erm(B) and mef(A) as mechanisms of macrolide, lincosamide, and streptogramin B resistance. Additionally, aadA1 and aac(6')-Ib are noted for aminoglycoside resistance, while catA1 and floR contribute to chloramphenicol resistance. The vanA gene is associated with glycopeptide resistance, and mcr-1 is linked to polymyxin resistance.
An Enterobacter plasmid as a new genetic background for the transposon Tn1331.
The study identifies the presence of the multidrug-resistance transposon Tn1331 in an Enterobacter plasmid, pR23, which carries the aac(6')-Ib, ant(3'')-Ia, and blaOXA-9 genes, conferring resistance to aminoglycosides, streptomycin, and beta-lactams, respectively.
Mechanisms of resistance and clinical relevance of resistance to β-lactams, glycopeptides, and fluoroquinolones.
The paper discusses the mechanisms of resistance to β-lactams, glycopeptides, and fluoroquinolones, highlighting the role of β-lactamases such as TEM, SHV, CTX-M, KPC, VIM, and NDM, glycopeptide resistance operons like vanA and vanB, and other resistance genes such as ermB, mecA, qnrA, and aac(6')-Ib.
The Acinetobacter baumannii Oxymoron: Commensal Hospital Dweller Turned Pan-Drug-Resistant Menace.
The paper discusses various virulence factors and mechanisms contributing to the pathogenicity and antibiotic resistance of Acinetobacter baumannii, including biofilm formation, surface polysaccharides, and outer membrane proteins.
RmtF, a new member of the aminoglycoside resistance 16S rRNA N7 G1405 methyltransferase family.
RmtF, a new member of the aminoglycoside resistance 16S rRNA N7 G1405 methyltransferase family.
Activity of plazomicin (ACHN-490) against MDR clinical isolates of Klebsiella pneumoniae, Escherichia coli, and Enterobacter spp. from Athens, Greece.
Plazomicin retained activity against all MDR isolates of Klebsiella pneumoniae, Escherichia coli, and Enterobacter spp., including those with ESBL, KPC, and VIM-MBL resistance mechanisms. Aminoglycoside-modifying enzymes such as aac(6')-Ib, aac(3')-Ia, and aac(3')-IIa were detected in some isolates but did not correlate with plazomicin resistance.
Spread of the bla(IMP-13) gene in French Pseudomonas aeruginosa through sequence types ST621, ST308 and ST111.
An antibiotic-resistant class 3 integron in an Enterobacter cloacae isolate from hospital effluent.
A new class 3 integron, In3-5, carrying the blaOXA-256 gene and an aac(6')-Ib variant was identified in an Enterobacter cloacae isolate from a hospital effluent sample. Both genes confer resistance to beta-lactams and aminoglycosides, respectively.
Molecular characterization of metallo-β-lactamase-producing Pseudomonas aeruginosa in a Czech hospital (2009-2011).
A high throughput multiplex PCR assay for simultaneous detection of seven aminoglycoside-resistance genes in Enterobacteriaceae.
The study developed a high-throughput GeXP assay for the simultaneous detection of seven aminoglycoside-resistance genes, including five aminoglycoside-modifying enzymes and two 16S rRNA methyltransferases, demonstrating high sensitivity and specificity.
Molecular characterization of multidrug-resistant extended-spectrum β-lactamase-producing Enterobacteriaceae isolated in Antananarivo, Madagascar.
The study identified bla CTX-M-15 and bla SHV-12 as the predominant ESBL genes in multidrug-resistant Enterobacteriaceae isolates in Antananarivo, along with other resistance genes such as aac(6')-Ib, tetA, sul1, sul2, qnrA, qnrB, and catB-3.
Copy Number Change of the NDM-1 sequence in a multidrug-resistant Klebsiella pneumoniae clinical isolate.
The study identifies the blaNDM-1 gene on plasmid pKPX-1 as a key factor in carbapenem resistance in a multidrug-resistant Klebsiella pneumoniae isolate. It also characterizes additional resistance genes such as aac(6')-Ib, aac(6')-Ib-cr, aph(3')-I, strB, qnrB, tetA, catA1, and catB4, which contribute to resistance against aminoglycosides, fluoroquinolones, tetracycline, and chloramphenicol.
Rise and dissemination of aminoglycoside resistance: the aac(6′)-Ib paradigm.
The study focuses on the aac(6′)-Ib gene, which encodes an aminoglycoside 6′-N-acetyltransferase, and its variant aac(6′)-Ib-cr, which expands the resistance spectrum to include quinolones. Both genes were experimentally validated for their roles in aminoglycoside resistance.
Genetic mechanisms of antimicrobial resistance identified in Salmonella enterica, Escherichia coli, and Enteroccocus spp. isolated from U.S. food animals.
The study identifies various AMR genes in Salmonella enterica, Escherichia coli, and Enterococcus spp. isolated from U.S. food animals, including aac(3'), aac(6'), aadA, aadA1, aadA2, aadA12, aphAI, aph(3')-Ii-iv, strA, strB, bla CMY-2, bla TEM-1, bla PSE-1, floR, cmlA, cat1, cat2, sul1, sul2, dfr1, dfrA10, tet(A), tet(B), tet(C), tet(D), tet(G), and tetR.
Nosocomial infection by sequence type 357 multidrug-resistant Acinetobacter baumannii isolates in a neonatal intensive care unit in Daejeon, Korea.
The study reports the first case of a nosocomial infection in a neonatal ICU in Korea caused by ST357 multidrug-resistant Acinetobacter baumannii strains. The isolates exhibited resistance to several antibiotics, including amikacin, gentamicin, ceftazidime, cefepime, and ciprofloxacin, due to the presence of aac(6')-Ib, aph(3')-Ia, armA, and mutations in gyrA and parC.
First report of NDM-1-producing Acinetobacter baumannii in East Africa.
The study reports the first identification of NDM-1-producing Acinetobacter baumannii in East Africa, highlighting the presence of various resistance genes including bla(NDM-1), bla(OXA-23), bla(OXA-51-like), bla(ADC), armA, aadB, aac(6')-Ib, and aph(3')-VI.
Antimicrobial resistance determinants in Acinetobacter baumannii isolates taken from military treatment facilities.
The study identified multiple antimicrobial resistance genes in Acinetobacter baumannii isolates from military treatment facilities, including bla OXA-51-like, bla OXA-23, bla GES-11, aac(6')-Ib, aacC1, aadB, aphA6, and others, highlighting the complex resistome of these isolates.
A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota.
The study identified numerous aminoglycoside and β-lactam resistance gene homologues in the gut microbiota of healthy adults, indicating that the human gut microbiota serves as a reservoir for antibiotic resistance genes even in the absence of recent antibiotic exposure.
Next-generation sequencing for typing and detection of resistance genes: performance of a new commercial method during an outbreak of extended-spectrum-beta-lactamase-producing Escherichia coli.
The study evaluated a new NGS assay for typing and detecting resistance genes in ESBL-producing E. coli isolates during an outbreak. The assay detected ESBL genes in 98% of isolates but couldn't differentiate between ESBL and non-ESBL TEM and SHV beta-lactamases or specify CTX-M groups. The aac(6')-Ib gene was prevalent among ST131 isolates and correlated with resistance to tobramycin.
Carbapenem-resistant Klebsiella pneumoniae strains exhibit diversity in aminoglycoside-modifying enzymes, which exert differing effects on plazomicin and other agents.
The study identified a diversity of aminoglycoside-modifying enzymes (AMEs) in carbapenem-resistant Klebsiella pneumoniae strains, including aac(6')-Ib, aph(3')-Ia, and aac(3)-IV, which contributed to varying levels of resistance to aminoglycosides such as gentamicin, tobramycin, and plazomicin.
Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain.
The study identifies multiple antibiotic resistance genes in the NDM-1-encoding Klebsiella pneumoniae strain, including eight beta-lactamase genes and various other resistance determinants, highlighting the complexity of its resistance profile.
Whole genome and transcriptome analyses of environmental antibiotic sensitive and multi-resistant Pseudomonas aeruginosa isolates exposed to waste water and tap water.
The study identifies multiple AMR genes and mutations in the multi-resistant P. aeruginosa isolate PA49, including aac(6')-Ib, aadB, blaVIM-2, ampC, and mutations in gyrA, parC, and oprD, which confer resistance to various antibiotics.
The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility.
The study identified several AMR genes and mutations in Pseudomonas aeruginosa, including beta-lactamases (blaVIM-2, blaOXA-2, blaPSE-1), aminoglycoside-modifying enzymes (aac(6')-Ib, aacA7), and efflux pumps (mexAB-oprM, mexXY-oprM). Mutations in gyrA (T83I) and parC (S87L) were associated with fluoroquinolone resistance.
Establishment and multi drug resistance evolution of ST235 Pseudomonas aeruginosa strains in the intensive care unit of a Colombian hospital.
Molecular characterization and epidemiology of cefoxitin resistance among Enterobacteriaceae lacking inducible chromosomal ampC genes from hospitalized and non-hospitalized patients in Algeria: description of new sequence type in Klebsiella pneumoniae isolates.
The study identified blaCMY-4 and blaDHA-1 as the primary plasmid-mediated AmpC beta-lactamase genes responsible for cefoxitin resistance in Enterobacteriaceae isolates in Algeria. Additionally, blaTEM-1, qnrB4, and aac(6')-Ib were found to coexist with these genes, contributing to multidrug resistance.
Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics.
The study identified eight unique resistance genes from ancient permafrost bacteria and ten from the active layer, showing resistance to aminoglycosides, β-lactams, and tetracyclines. Some genes conferred resistance to semi-synthetic antibiotics like amikacin.
Study of aminoglycoside resistance genes in enterococcus and salmonella strains isolated from ilam and milad hospitals, iran.
The study identified aac(3)-Ia, aac(3)-IIa, and aac(6')-Ib genes as significant contributors to aminoglycoside resistance in Enterococcus isolates, whereas no aminoglycoside resistance genes were found in Salmonella isolates.
Enterobacter aerogenes and Enterobacter cloacae; versatile bacterial pathogens confronting antibiotic treatment.
The paper discusses the various mechanisms of antibiotic resistance in Enterobacter aerogenes and Enterobacter cloacae, including beta-lactamases, aminoglycoside-modifying enzymes, efflux pumps, and porin mutations. It highlights the role of specific genes such as bla TEM-24, bla CMY-10, ampC, aac (6')-Ib, aac (6')-Ib-cr, qnrA, qnrS, oqxAB, acrAB-TolC, mcr, bla OXA-1, bla OXA-30, bla CTX-M-15, bla NDM-1, bla VIM, bla KPC, and bla OXA-48 in conferring resistance to various antibiotics.
An outbreak of colistin-resistant Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae in the Netherlands (July to December 2013), with inter-institutional spread.
The study describes an outbreak of colistin-resistant KPC-producing K. pneumoniae ST258 in the Netherlands, highlighting the presence of multiple resistance genes including blaKPC-2, blaSHV-12, and various other AMR genes.
Inhibition of AAC(6′)-Ib-mediated resistance to amikacin in Acinetobacter baumannii by an antisense peptide-conjugated 2′,4′-bridged nucleic acid-NC-DNA hybrid oligomer.
The study demonstrates that antisense oligomers targeting the aac(6')-Ib gene can inhibit the translation of the AAC(6')-Ib enzyme, thereby reducing amikacin resistance in Acinetobacter baumannii.
Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa.
Mutational and acquired carbapenem resistance mechanisms in multidrug resistant Pseudomonas aeruginosa clinical isolates from Recife, Brazil.
The study identifies several AMR genes including blaGES-1, blaKPC-2, blaSPM-1, aac(6')-Ib, ant(2')-Ia, aph(3')-VIa, rmtD, catB3, arr-4, qacED1, sul1, and intI1, as well as mutations in the oprD gene contributing to carbapenem resistance in multidrug-resistant P. aeruginosa isolates from Recife, Brazil.
Identification of an Inhibitor of the Aminoglycoside 6'-N-Acetyltransferase type Ib [AAC(6')-Ib] by Glide Molecular Docking.
The study identifies compound 1 as an inhibitor of the aminoglycoside 6'-N-acetyltransferase type Ib (AAC(6')-Ib), which confers resistance to aminoglycosides. Compound 1 inhibits the acetylation of aminoglycosides in vitro and suppresses the growth of an amikacin-resistant Acinetobacter baumannii clinical strain when combined with amikacin.
AMINOGLYCOSIDE RESISTANCE GENES IN Pseudomonas aeruginosa ISOLATES FROM CUMANA, VENEZUELA.
The study identified aac(6')-Ib, aphA1, and aadB as the most frequently detected aminoglycoside resistance genes in Pseudomonas aeruginosa isolates from HUAPA, Cumana, Venezuela. These genes were associated with resistance to tobramycin and amikacin.
Antimicrobial Resistance Mechanisms
The paper discusses various mechanisms of antibiotic resistance, including beta-lactamases like blaKPC, blaNDM, blaIMP, and blaVIM, which confer resistance to carbapenems. It also covers aminoglycoside modifying enzymes such as aac(6')-Ib and aac(6')-I, quinolone resistance proteins like qnr, tetracycline resistance genes such as tet(M) and tet(O), macrolide resistance genes like erm, mefA, and mefE, and efflux pump systems like mexAB-oprM and acrAB-tolC.
Identification of an NDM-5-producing Escherichia coli Sequence Type 167 in a Neonatal Patient in China.
The study identifies NDM-5-producing Escherichia coli ST167 in a neonatal patient in China, highlighting the spread of carbapenem resistance through the bla NDM-5 gene and other resistance mechanisms.
KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae.
The study presents KlebSeq, a diagnostic tool for detecting and monitoring Klebsiella pneumoniae, including its AMR and virulence profiles. It identified various AMR genes such as aac(6')-Ib, aac(6')-Ib-cr, gyrA, npmA, blaCTX-M, and blaKPC, demonstrating the effectiveness of amplicon sequencing for AMR detection.
Carbapenem Resistance in Acinetobacter baumannii and Other Acinetobacter spp. Causing Neonatal Sepsis: Focus on NDM-1 and Its Linkage to ISAba125.
The study identifies NDM-1 as a major carbapenem resistance determinant in Acinetobacter spp. causing neonatal sepsis, along with other beta-lactamases like OXA-23-like, OXA-58-like, PER-1, VEB-2, and aminoglycoside modifying enzymes such as aac(6')-Ib, aac(6')-Ib-cr, and armA.
Mechanisms of Evolution in High-Consequence Drug Resistance Plasmids.
The study identifies the blaKPC gene and aac(6')-Ib as key contributors to carbapenem and aminoglycoside resistance in Enterobacteriaceae, highlighting the role of plasmid rearrangements and transposable elements in the evolution of resistance.
Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.
The study identifies multiple carbapenemase genes (bla KPC-2, bla KPC-3, bla KPC-4, and bla NDM-1) and other resistance genes (such as qnrB19, qnrB2, qnrS1, bla TEM-1A, bla TEM-1B, bla OXA-9, bla SHV-12, aadA2, aac(6')-Ib, aac(6')-Ib-cr, aph(3')-Ia, aph(3')-Ic, strA, strB, sul1, sul2, dfrA14, dfrA18, mph(A), catB3, arr-3, and tet(D)) in carbapenem-resistant Enterobacter spp. These genes are primarily located on plasmids and contribute to multidrug resistance.
The occurrence of ESBL-producing Escherichia coli carrying aminoglycoside resistance genes in urinary tract infections in Saudi Arabia.
The study identified ESBL-producing E. coli isolates carrying bla CTX-M1, bla CTX-M15, bla OXA1, and bla TEM genes, along with aminoglycoside resistance genes such as aac6, aac6Ib, aadA4, and strB.
Characterization of Multi-Drug Resistant Enterococcus faecalis Isolated from Cephalic Recording Chambers in Research Macaques (Macaca spp.).
The study identified various AMR genes and mutations in Enterococcus faecalis isolates from macaque cephalic implants, highlighting the presence of high-level aminoglycoside resistance, tetracycline resistance, and bacitracin resistance. These findings emphasize the complexity of AMR in clinical settings and the need for targeted antimicrobial strategies.
Bacterial plasmid-mediated quinolone resistance genes in aquatic environments in China.
The study identified qepA and aac-(6')-Ib as dominant plasmid-mediated quinolone resistance (PMQR) genes in aquatic environments in China, highlighting their significant contribution to quinolone resistance and their potential co-occurrence with β-lactam resistance genes.
Panel strain of Klebsiella pneumoniae for beta-lactam antibiotic evaluation: their phenotypic and genotypic characterization.
The study characterizes various AMR genes and mutations in K. pneumoniae panel strains, including beta-lactamases (bla SHV-11, bla TEM-1, bla CTX-M15, bla OXA-1, bla SHV-12, bla SHV-187, bla SHV-158, bla DHA-1, bla CMY-2), aminoglycoside modifying enzymes (aac(6')-Ib, strA, strB, aadA1, aadA2), quinolone resistance genes (qnrB66, qnrB4, oqxA, oqxB), tetracycline resistance (tet(A)), trimethoprim resistance (dfrA14), sulfonamide resistance (sul1, sul2), and porin genes (OmpK35, OmpK36).
Prevalence of MDR pathogens of bacterial meningitis in Egypt and new synergistic antibiotic combinations.
The study identified several AMR genes including TEM, SHV, CTX-M, aac(6')-Ib, and qnrA in MDR isolates from bacterial meningitis patients in Egypt.
Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland.
The study identifies several AMR genes and mutations associated with multidrug-resistant Klebsiella pneumoniae in the UK and Ireland, including beta-lactamases, aminoglycoside-modifying enzymes, tetracycline efflux pumps, and mutations in gyrB contributing to fluoroquinolone resistance.
Sequencing and expression of the 6'-N-acetyltransferase gene of transposon Tn1331 from Klebsiella pneumoniae., Primary structure of an aminoglycoside 6'-N-acetyltransferase AAC(6')-4, fused in vivo with the signal peptide of the Tn3-encoded beta-lactamase.
Antimicrobial resistance of Klebsiella pneumoniae stool isolates circulating in Kenya.
The study identified 46 AMR genes or gene families in 90 Klebsiella pneumoniae isolates from Kenya, highlighting the prevalence of multidrug resistance and the diversity of resistance mechanisms.
Multidrug Resistance Mechanisms of Carbapenem Resistant Klebsiella pneumoniae Strains Isolated in Chongqing, China.
The study identified the high prevalence of blaNDM-1 and blaKPC-2 genes in carbapenem-resistant Klebsiella pneumoniae isolates, along with various quinolone and aminoglycoside resistance genes such as qnrB, aac(6')-Ib, rmtB, qnrS, and acc(6')-Ib-cr.
Extensively Drug-Resistant Klebsiella pneumoniae Causing Nosocomial Bloodstream Infections in China: Molecular Investigation of Antibiotic Resistance Determinants, Informing Therapy, and Clinical Outcomes.
The study identified multiple AMR genes and mutations in XDR K. pneumoniae isolates, including bla KPC−2, rmtB, aac(6′)-Ib, APH(3′)-Ia, AAC(3)-IV, qnrS, qnrB, aac(6′)-Ib-cr, bla CTX−M−14, bla CTX−M−65, bla SHV−11, bla TEM, bla CMY, bla DHA−1, gyrA, and parC, which contribute to resistance against various antibiotics.
Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.
The study identified various antibiotic resistance genes, including bla CTX-M-15, aac(6')-Ib, bla OXA-1, bla TEM-1, dfrA, mphA, sul1, and tetA, in E. coli isolates, highlighting the multidrug-resistant nature of ST131 and the presence of distinct plasmid profiles contributing to resistance.
A Prospective Cohort Multicenter Study of Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Nine Latin American Countries.
The study identified multiple AMR genes, including aac(6')-Ib and ermA, which confer resistance to aminoglycosides and macrolides/lincosamides/streptogramin B, respectively, in Staphylococcus aureus isolates from Latin America.
Inhibition of aminoglycoside 6'-N-acetyltransferase type Ib-mediated amikacin resistance by zinc complexed with clioquinol, an ionophore active against tumors and neurodegenerative diseases.
The study shows that zinc complexed with clioquinol can reduce amikacin resistance mediated by the aac(6')-Ib gene in Acinetobacter baumannii and Escherichia coli.
Genomics and Susceptibility Profiles of Extensively Drug-Resistant Pseudomonas aeruginosa Isolates from Spain.
The study identified various AMR genes and mutations in extensively drug-resistant Pseudomonas aeruginosa isolates from Spain, including beta-lactamases, aminoglycoside-modifying enzymes, and mutations in genes such as ampC, oprD, gyrA, parC, mexZ, and glpT, which contribute to resistance against multiple antibiotics.
Resistance to Antibiotics, Biocides, Preservatives and Metals in Bacteria Isolated from Seafoods: Co-Selection of Strains Resistant or Tolerant to Different Classes of Compounds.
The study identified multiple antibiotic resistance genes, including sul1, sul2, floR, aadA1, aac(6')-Ib, blaTEM, blaCTX-M, blaPSE, blaNDM-1, qacEΔ1, pcoA/copA, chrB, and pcoR, in bacterial isolates from seafood. These genes conferred resistance to sulfonamides, phenicols, aminoglycosides, beta-lactams, and heavy metals.
Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates.
The study demonstrates the feasibility of rapid nanopore sequencing for detecting plasmid-borne antimicrobial resistance (AMR) genes in clinical isolates. It identifies several AMR genes, including beta-lactamases, aminoglycoside-modifying enzymes, sulfonamide resistance genes, tetracycline resistance genes, macrolide resistance genes, and phenicol resistance genes, in both Escherichia coli and Klebsiella pneumoniae isolates.
Molecular screening of antibiotic-resistant determinants among multidrug-resistant clinical isolates of Proteus mirabilis from SouthWest Nigeria.
The study identified several AMR genes, including bla TEM-1, bla CTX-M-15, aac(6')-Ib, aac(6')-Ib-cr, and qnrA, in multidrug-resistant Proteus mirabilis isolates from SouthWest Nigeria.
Characterization of Four Multidrug Resistance Plasmids Captured from the Sediments of an Urban Coastal Wetland.
Four multidrug resistance plasmids were captured from the sediments of an urban coastal wetland. These plasmids carried various resistance genes, including beta-lactamases, tetracycline resistance genes, sulfonamide resistance genes, and others, conferring resistance to multiple antibiotics.
Amikacin: Uses, Resistance, and Prospects for Inhibition.
The study focuses on the aac(6′)-Ib gene, which encodes the AAC(6′)-Ib enzyme, a major contributor to amikacin resistance in Gram-negative bacteria. The gene is found in integrons, transposons, plasmids, and chromosomes and is associated with resistance to amikacin, tobramycin, and kanamycin.
Evaluation of Aminoglycoside and Carbapenem Resistance in a Collection of Drug-Resistant Pseudomonas aeruginosa Clinical Isolates.
The study identified aac(6')-Ib, aac(3)-IV, ant(2" )-Ia, and aph(3')-Ia as the most common aminoglycoside-modifying enzymes in multidrug-resistant Pseudomonas aeruginosa clinical isolates, which conferred resistance to various aminoglycosides.
Comparative transcriptomics of multidrug-resistant Acinetobacter baumannii in response to antibiotic treatments.
Two transposon-associated genes, mph and mel, were experimentally validated to confer amikacin resistance in E. coli. Additionally, the beta-lactamase gene blaOXA-23 was identified as transposon-associated and previously reported to confer carbapenem resistance.
Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon.
The study identified multiple antibiotic resistance genes in ESBL-producing K. pneumoniae isolates from pigs and abattoir workers in Cameroon, including bla CTX-M-15, bla TEM-1B, bla SHV-28, and others, highlighting the presence of multidrug-resistant strains and their potential for zoonotic transmission.
Prevalence of Aminoglycoside-Modifying Enzymes in Escherichia coli and Klebsiella pneumoniae Producing Extended Spectrum β-Lactamases Collected in Two Multicenter Studies in Spain.
The study identified aac(6')-Ib, aac(3)-IIa, and aph(3')-Ia as the most prevalent aminoglycoside-modifying enzymes in Escherichia coli and Klebsiella pneumoniae producing extended spectrum β-lactamases in Spain. These genes were associated with resistance to various aminoglycosides.
Genetic analysis of invasive Escherichia coli in Scotland reveals determinants of healthcare-associated versus community-acquired infections.
The study identified several antibiotic resistance genes in E. coli isolates, including blaCTX-M-15, blaCTX-M-9, aac(3)-II, aac(6')-Ib, aadA1, dfrA1, sul1, sul2, mphA, and mrxA, which contribute to resistance against various antibiotics such as third-generation cephalosporins, aminoglycosides, trimethoprim, sulfonamides, and macrolides.
Genetic analysis of invasive Escherichia coli in Scotland reveals determinants of healthcare-associated versus community-acquired infections.
The study identified several antibiotic resistance genes in E. coli isolates, including blaCTX-M-15, blaCTX-M-9, aac(3)-II, aac(6')-Ib, aadA1, dfrA1, sul1, sul2, mphA, and mrxA, which contribute to resistance against various antibiotics such as third-generation cephalosporins, aminoglycosides, trimethoprim, sulfonamides, and macrolides.
Antimicrobial Resistance in Acinetobacter spp. and Pseudomonas spp.
The paper discusses the antimicrobial resistance mechanisms in Acinetobacter spp. and Pseudomonas spp., focusing on the identification of resistance genes such as blaOXA-23, blaOXA-51, aac(6')-Ib, aac(3')-I, aph(3')-VI, ANT(2'')-I, ArmA, and efflux pumps like MexAB-OprM and MexXY-OprM. It also highlights mutations in gyrA and parC contributing to fluoroquinolone resistance.
Interplay Between the Phenotype and Genotype, and Efflux Pumps in Drug-Resistant Strains of Riemerella anatipestifer.
The study identified multiple AMR genes and mutations in Riemerella anatipestifer, including aac(6')-Ib, aadA1, aadA2, aadA5, aac(3')-IIc, aac(3')-IV, aph(3')-VII, aph(2')-Ib, bla TEM, bla OXA, tet(A), tet(B), sul1, sul2, sul3, cat2, cmlA, floR, emrF, qnrS, and qnrD. Additionally, mutations in gyrA and parC were found to confer fluoroquinolone resistance.
Population Structure, Antibiotic Resistance, and Uropathogenicity of Klebsiella variicola.
The study identifies several antibiotic resistance genes in Klebsiella variicola, including blaLEN, oqxAB, blaKPC-2, blaNDM-1, blaNDM-9, blaOXA-48, aac(6')-Ib, aadA16, sul1, sul2, qnrB6, arr-3, and floR. These genes confer resistance to various antibiotics such as ampicillin, ciprofloxacin, meropenem, gentamicin, kanamycin, sulfamethoxazole, rifampin, and chloramphenicol.
Molecular characterisation of the NDM-1-encoding plasmid p2189-NDM in an Escherichia coli ST410 clinical isolate from Ghana.
The study identifies the NDM-1-producing E. coli strain EC2189 carrying the plasmid p2189-NDM, which contains multiple AMR genes including blaNDM-1, aadA1, aac(6')-Ib, sul3, dfrA12, cmlA1, blaCTX-M-15, blaTEM-1A, and blaOXA-9. The plasmid p2189-NDM exhibits a unique genetic structure and is phylogenetically distinct from previously identified blaNDM-1-positive plasmids.
Extensive drug resistant Salmonella enterica serovar Senftenberg carrying blaNDM encoding plasmid p5558 (IncA/C) from India.
The study identifies multiple antimicrobial resistance genes in a multidrug-resistant Salmonella enterica serovar Senftenberg isolate, including blaNDM-1, blaTEM-1, blaOXA-9, blaCMY-2, aac(6')-Ia, aac(6')-Ib, aph(3')-Ib, aph(6')-Ib, ant(3'')-Ia, sul-1, sul-2, and florR. Additionally, mutations in gyrA (S83Y, D87G) and parC (S80I) were associated with fluoroquinolone resistance.
Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes.
The study characterizes multidrug-resistant Escherichia coli isolates from South-Kivu Province, Democratic Republic of Congo, identifying several AMR genes including blaCTX-M-15, blaTEM-1, blaOXA-1, aac(6')-Ib, qnrS1, cat, sulI, sulII, tet(A), and dhfr. It also identifies chromosomal mutations in gyrA and parC contributing to quinolone resistance.
Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains.
The study characterizes the role of efflux pumps in multidrug resistance of clinical E. coli and P. aeruginosa strains, showing that deletion of tolC and oprM significantly affects antibiotic susceptibility, but other resistance mechanisms persist.
Characterization of the emerging multidrug-resistant Salmonella enterica serovar Indiana strains in China.
The study identifies multiple AMR genes, including aac(6')-Ib, blaOXA-30, catB3, arr-3, qacE, sul1, intI1, armA, msrE, mphE, and blaCTX-M-3, in multidrug-resistant Salmonella enterica serovar Indiana strains in China, highlighting the role of class I integrons in the dissemination of resistance.
Detection of Aminoglycoside Resistant Bacteria in Sludge Samples From Norwegian Drinking Water Treatment Plants.
The study identified aminoglycoside resistance genes aac(6')-Ib, aph(3')-II, and aph(3')-III in a small percentage of the isolates, indicating that resistance mechanisms in the sludge samples are not predominantly due to these enzymes.
Independent Microevolution Mediated by Mobile Genetic Elements of Individual Clostridium difficile Isolates from Clade 4 Revealed by Whole-Genome Sequencing.
The study identified multiple antimicrobial resistance genes, including aac(6')-Ib, ermB, tetM, and catD, in Clostridium difficile isolates from clade 4, highlighting the role of mobile genetic elements in the evolution of multidrug resistance.
Restoration of susceptibility to amikacin by 8-hydroxyquinoline analogs complexed to zinc.
The study identifies aac(6')-Ib as a gene responsible for amikacin resistance in Acinetobacter baumannii and demonstrates that Zn2+ complexed with certain 8-hydroxyquinoline analogs can restore susceptibility by inhibiting the enzymatic acetylation of amikacin.
Evaluation of the Synergy of Ceftazidime-Avibactam in Combination with Meropenem, Amikacin, Aztreonam, Colistin, or Fosfomycin against Well-Characterized Multidrug-Resistant Klebsiella pneumoniae and Pseudomonas aeruginosa.
The study evaluated the synergy of ceftazidime-avibactam (CZA) in combination with other antibiotics against multidrug-resistant Klebsiella pneumoniae and Pseudomonas aeruginosa. Several AMR genes, including blaKPC-2, blaKPC-3, blaCTX-M-15, and others, were identified as conferring resistance to CZA and other antibiotics.
Genomic Features of High-Priority Salmonella enterica Serovars Circulating in the Food Production Chain, Brazil, 2000-2016.
The study identified several AMR genes in Salmonella enterica isolates from Brazil, including qnrE1, qnrB19, qnrS1, blaCTX-M-2, blaCTX-M-8, blaCMY-2, aadA1, aadA2, aac(3)-IVa, aac(3)-IIa, aac(6')-Ib, floR, sul1, sul2, tet(A), tet(B), strA, strB, drfA1, inu(F), qacEdelta1, and fosA7. These genes conferred resistance to various antibiotics such as fluoroquinolones, beta-lactams, aminoglycosides, sulfonamides, tetracyclines, chloramphenicol, trimethoprim, macrolides, quaternary ammonium compounds, and fosfomycin.
Bogotá River anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes.
The study identifies multiple antibiotic resistance genes (ARGs) in water samples from the Bogotá River and hospital wastewaters, indicating the spread of resistance due to anthropogenic contamination.
Characterization of Discriminatory Antimicrobial Resistance Genes in Aquatic Environments Using Machine Learning
The study identifies discriminatory antibiotic resistance genes (ARGs) using an extremely randomized tree (ERT) algorithm, highlighting genes like sul1, tet(W), and ermB as significant markers for differentiating resistomes across various aquatic environments.
Cooccurrence of NDM-1, ESBL, RmtC, AAC(6')-Ib, and QnrB in Clonally Related Klebsiella pneumoniae Isolates Together with Coexistence of CMY-4 and AAC(6')-Ib in Enterobacter cloacae Isolates from Saudi Arabia.
The study identifies the coexistence of multiple AMR genes, including blaNDM-1, blaVIM-1, qnrB, rmtC, aac(6')-Ib, and blaCMY-4, in carbapenem-resistant K. pneumoniae and E. cloacae isolates from Saudi Arabia.
Antimicrobial Resistance Mechanisms in Antibiotic-Producing Bacteria and Pathogens
The paper discusses various antimicrobial resistance mechanisms in antibiotic-producing bacteria and pathogens, focusing on genes and mutations that confer resistance to different classes of antibiotics, including beta-lactams, aminoglycosides, tetracyclines, chloramphenicol, macrolides, and others.
An Outbreak of Carbapenem-Resistant and Hypervirulent Klebsiella pneumoniae in an Intensive Care Unit of a Major Teaching Hospital in Wenzhou, China.
The study identified carbapenem-resistant and hypervirulent Klebsiella pneumoniae isolates carrying bla KPC−2, aac(3')-Ia, aac(6')-Ib, ANT(3')-Ia, rmtB, rmtC, qnrB, qnrS, oqxA, bla SHV−11, bla CTX−M−2 group, bla CTX−M−9 group, bla TEM−1, bla CMY−2, and bla DHA genes, contributing to multidrug resistance.
Evolution of Antibiotic Resistance of Coagulase-Negative Staphylococci Isolated from Healthy Turkeys in Egypt: First Report of Linezolid Resistance.
This study identified the first report of linezolid resistance in coagulase-negative staphylococci (CoNS) isolated from healthy turkeys in Egypt. The study found that 79.5% of the isolates were resistant to linezolid, and the resistance was associated with the presence of the cfr, optrA, and valS genes. The study also found high levels of resistance to other antibiotics, including erythromycin, chloramphenicol, oxacillin, daptomycin, and tigecycline.
Diversity of Serotype, Genotype, and Antibiotic Susceptibility of Salmonella Prevalent in Pickled Ready-to-Eat Meat.
The study identified several AMR genes and mutations in Salmonella isolates from pickled ready-to-eat meat, including qnrB, oqxAB, aac(6')-Ib, and qnrA, as well as mutations in gyrA and parC contributing to quinolone resistance.
KPC-2-producing Klebsiella pneumoniae ST147 in a neonatal unit: Clonal isolates with differences in colistin susceptibility attributed to AcrAB-TolC pump.
Population structure of KPC carbapenemase-producing Klebsiella pneumoniae in a long-term acute-care rehabilitation facility: identification of a new lineage of clonal group 101, associated with local hyperendemicity.
The study identifies a new lineage of KPC-producing Klebsiella pneumoniae (ST2502) associated with hyperendemicity in a long-term acute-care rehabilitation facility. Key AMR genes include armA, blaKPC-3, blaKPC-2, and aac6-Ib, with pmrA mutations contributing to colistin resistance.
Phenotypic and molecular characterization of antimicrobial resistant Escherichia coli from urinary tract infections in Port-Harcourt, Nigeria.
The study identified multiple antimicrobial resistance genes in E. coli isolates from urinary tract infections in Port-Harcourt, Nigeria, including blaTEM, blaCTX-M-15, blaSHV, blaOXA-1, blaCMY-2, qnrD, qnrS, aac(6')-Ib, and aacC2. These genes were associated with resistance to various antibiotics, highlighting the complexity of multidrug resistance in these isolates.
A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent Infection in Children.
The study identified various multidrug-resistant Enterobacteriaceae (MDR-Ent) in Chicago waterways, including genes encoding beta-lactamases (CTX-M-1, CTX-M-9, SHV-ESBL, CMY-II-AmpC), aminoglycoside modifying enzymes (aac-6'-Ib), quinolone resistance proteins (qnrB), efflux pump components (oqxA/B), and colistin resistance (mcr-1). These genes were found in E. coli, K. pneumoniae, and E. cloacae isolates and conferred resistance to multiple antibiotics.
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing.
The study identified multiple AMR genes in extensively drug-resistant Klebsiella pneumoniae isolates, including beta-lactamases (blaSHV-11, blaTEM-1B, blaVEB-1, blaOXA-10, blaKPC-2, blaOXA-9, blaVIM-27, blaCTX-M-15, blaOXA-1, blaOXA-48), aminoglycoside resistance genes (aadA1, ant(2'')-Ia, aph(6)-Id, arr-2, aadA24, aph(3')-Ia, aph(6)-Id, aac(3)-IIa, aac(6')Ib-cr, aac(6')-Ib, aac(6')-Ib-cr), sulfonamide resistance genes (sul1, sul2), tetracycline resistance genes (tet(A), tet(G)), trimethoprim resistance genes (dfrA1, dfrA14, dfrA23), chloramphenicol resistance genes (cmlA1, catB4), and others.
Antibiotic resistance in bacterial isolates from freshwater samples in Fildes Peninsula, King George Island, Antarctica.
The study identified antibiotic resistance genes such as aac(6')-Ib, bla CTX-M-2, bla PER-2, pAmp CDHA, and pAmp CFOX in bacterial isolates from freshwater samples in Antarctica, highlighting the impact of human activity on the local microbiota and the presence of resistance genes in areas under different levels of human and animal influence.
Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.
The study identifies known and novel antimicrobial resistance genes using a machine learning approach on pan-genomes of Staphylococcus aureus, Pseudomonas aeruginosa, and Escherichia coli. Key findings include the detection of resistance genes such as gyrA, parC, ermC, lmrS, aac(6')-aph(2"), dfrG, tetK, and various beta-lactamases.
Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum.
The study identified several AMR genes in Enterococcus spp., including erm(B), tet(M), optrA, dfrE, lsa(A), aac(6')-Ib, eat(A), ant(6)-Ia, aph(3')-IIIa, sat4, tet(L), bcrB, bcrC, dfrF, and dfrG, which confer resistance to various antibiotics such as macrolides, tetracyclines, oxazolidinones, trimethoprim, and aminoglycosides.
Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology.
The study identified several AMR genes in Gram-negative bacteria isolated from LTCF residents, including bla CTX-M-27, bla CTX-M-14, bla TEM-1B, bla IMP-1, and others, which confer resistance to various antibiotics such as β-lactams, aminoglycosides, and fluoroquinolones.
Origin, maintenance and spread of antibiotic resistance genes within plasmids and chromosomes of bloodstream isolates of Escherichia coli.
The study characterizes the presence of antibiotic resistance genes such as bla CTX-M-15, bla OXA-1, dfrA7, and aadA4 in plasmids and chromosomes of bloodstream isolates of Escherichia coli, highlighting their distribution and potential for horizontal gene transfer.
Genomic Analysis of GC1 Strains from H1 Hospital
The study identifies various AMR genes in GC1 Group 1 and Outgroup Group 3 genomes, including aac(6')-Ib, aph(3')-Ia, aac(3)-IIa, sul1, sul2, tet(A), tet(G), catA1, intI1, intI2, and efflux pumps adeABC, adeIJK, and adeFGH. These genes contribute to multidrug resistance in Acinetobacter baumannii.
A rapid and accurate method for the detection of four aminoglycoside modifying enzyme drug resistance gene in clinical strains of Escherichia coli by a multiplex polymerase chain reaction.
The study developed a multiplex PCR method for the detection of four aminoglycoside modifying enzyme resistance genes (Aac(6′)-Ib, Aac(3)-II, Ant(3″)-Ia, and Aph(3′)-Ia) in clinical strains of Escherichia coli.
Co-occurrence of mcr-1, mcr-3, mcr-7 and clinically relevant antimicrobial resistance genes in environmental and fecal samples.
The study identified the co-occurrence of mcr-1, mcr-3, mcr-7.1, and various clinically relevant antimicrobial resistance genes in environmental and fecal samples from a Brazilian zoo, highlighting the potential reservoir of these genes in zoological environments.
Host dependent maintenance of a bla(NDM-1)-encoding plasmid in clinical Escherichia coli isolates.
The study characterizes a blaNDM-1-encoding plasmid in clinical E. coli isolates, highlighting its ability to transfer between different genetic backgrounds and its association with carbapenem resistance.
Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data.
The study presents machine learning models for predicting antimicrobial resistance in Gram-negative bacteria using whole-genome sequencing data. Key resistance genes identified include AAC(6')-Ib, APH(3")-Ib, OqxB21, FosA2, SHV-200, EC-18, CTX-M-222, KPC-33, OXA-51, and OXA-561.
A coup d'état by NDM-producing Klebsiella pneumoniae overthrows the major bacterial population during KPC-directed therapy.
The study characterizes the emergence and dominance of a minor NDM-producing Klebsiella pneumoniae population during KPC-directed therapy, highlighting challenges in detecting and managing drug-resistant subpopulations.
Characterization of a SPM-1 metallo-beta-lactamase-producing Pseudomonas aeruginosa by comparative genomics and phenotypic analysis.
The study characterizes the multidrug-resistant Pseudomonas aeruginosa isolate CCBH4851, identifying several AMR genes including blaSPM-1, sul1, rmtD, blaOXA-56, aac(6')-I, aadA7, cmx, and bcr, as well as mutations in oprD and mexZ contributing to resistance.
The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2017/2018.
The report highlights the prevalence of antimicrobial resistance in zoonotic and indicator bacteria, focusing on Salmonella, Campylobacter, and E. coli. It notes high resistance levels to ampicillin, sulfonamides, and tetracyclines in Salmonella and E. coli isolates, along with rising resistance to fluoroquinolones in certain serovars. Carbapenemase-producing E. coli and Salmonella were rarely detected.
Genomic and Long-Term Transcriptomic Imprints Related to the Daptomycin Mechanism of Action Occurring in Daptomycin- and Methicillin-Resistant Staphylococcus aureus Under Daptomycin Exposure.
The study identified various AMR genes and mutations associated with daptomycin resistance in MRSA strains, including genes such as aac(6')-Ib, blaZ, mecA, ermC, fexB, tetM, tet38, dfrC, fosD, and vgaA, as well as mutations in mprF, rpoB, grlA, grlB, and gyrA.
Molecular Characterization and Comparative Genomics of IncQ-3 Plasmids Conferring Resistance to Various Antibiotics Isolated from a Wastewater Treatment Plant in Warsaw (Poland).
The study identified several AMR genes in IncQ-3 plasmids, including blaGES-7, qnrS2, aac(6')-ib, dfrB3, and blaFOX-15, which confer resistance to beta-lactams, fluoroquinolones, aminoglycosides, and trimethoprim.
Genomic analysis reveals high virulence and antibiotic resistance amongst phage susceptible Acinetobacter baumannii.
The study identified multiple antibiotic resistance genes in phage-susceptible Acinetobacter baumannii strains, including sulfonamide, tetracycline, beta-lactam, aminoglycoside, macrolide, and phenicol resistance genes. These findings highlight the complex resistance profiles of these strains and their potential implications for therapeutic strategies.
Biological Characteristics and Genetic Analysis of a Highly Pathogenic Proteus Mirabilis Strain Isolated From Dogs in China.
The study identified 18 antibiotic resistance genes in the multidrug-resistant Proteus mirabilis strain CC15031, including genes conferring resistance to various antibiotics such as chloramphenicol, tetracycline, aminoglycosides, beta-lactams, sulfonamides, and others.
Features of Streptococcus agalactiae strains recovered from pregnant women and newborns attending different hospitals in Ethiopia.
The study identified tetracycline resistance genes tetM, tetL, and tetO, macrolide/lincosamide resistance genes ermTR, ermB, and lnu, and aminoglycoside resistance gene aac(6')-Ib in Streptococcus agalactiae isolates. Additionally, mutations in gyrA and parC were associated with fluoroquinolone resistance.
Evidence for the Dissemination to Humans of Methicillin-Resistant Staphylococcus aureus ST398 through the Pork Production Chain: A Study in a Portuguese Slaughterhouse.
The study identified multiple antimicrobial resistance genes in MRSA ST398 isolates from a Portuguese slaughterhouse, highlighting the dissemination of these resistant strains through the pork production chain and their potential to colonize humans.
Genomic and phenotypic analyses of multidrug-resistant Acinetobacter baumannii NCCP 16007 isolated from a patient with a urinary tract infection.
The study identifies multiple AMR genes and mutations in the multidrug-resistant A. baumannii NCCP 16007 strain, including pmrC, pmrB, blaOXA-23, and various aminoglycoside, tetracycline, and beta-lactam resistance genes, contributing to its high resistance to polymyxin B and other antibiotics.
Emergence of the Novel Aminoglycoside Acetyltransferase Variant aac(6')-Ib-D179Y and Acquisition of Colistin Heteroresistance in Carbapenem-Resistant Klebsiella pneumoniae Due to a Disrupting Mutation in the DNA Repair Enzyme MutS.
Collateral sensitivity associated with antibiotic resistance plasmids.
The study identifies several AMR genes carried by clinically relevant plasmids, including blaOXA-48, qnrS1, blaSHV-12, aac(6')-Ib3, blaVEB-9, qnrVC-1, sul1, tetA', tetC, dfrA1, dfrA23, blaVIM-1, aadA1, qacEΔ1, blaBEL-1, blaGES-5, blaIMP-8, and blaFOX-8. These genes confer resistance to various antibiotics, and the study highlights the collateral sensitivity associated with the acquisition of these plasmids.
Characterization of Enterococci- and ESBL-Producing Escherichia coli Isolated from Milk of Bovides with Mastitis in Egypt.
The study identified several AMR genes in Enterococcus and ESBL-producing E. coli isolates from bovine mastitis cases in Egypt, including erm(B), tetL, aac-aphD, vanA, and vanB.
Genomic Analysis of Antimicrobial Resistance and Resistance Plasmids in Salmonella Serovars from Poultry in Nigeria.
The study identified various antimicrobial resistance genes in Salmonella isolates from Nigerian poultry, including aac(6')-Ia, aac(6')-Ib, aadA7, aph(3")-Ia, aph(3")-Ib, aph(6')-Id, aph(6')-Ic, aac(3)-Ia, aac(3)-IIa, aac(3)-IVa, aac(6')-IIa, aac(3)-Id, sul1, sul2, sul3, tet(A), tet(M), qnrS1, qnrB19, blaTEM, dfrA14, dfrA15, dfrA17, catA1, cmlA1, and floR. Mutations in gyrA (Ser83Phe, Asp87Tyr) and parC (Thr57Ser, Ser80Ile) were also associated with resistance to nalidixic acid and ciprofloxacin.
Occurrence of Antibiotic Resistance Genes in Hermetia illucens Larvae Fed Coffee Silverskin Enriched with Schizochytrium limacinum or Isochrysis galbana Microalgae.
The study identified several tetracycline resistance genes (tet(M), tet(S), tet(K)), erythromycin resistance genes (erm(B), erm(C)), a methicillin resistance gene (mecA), and an aminoglycoside resistance gene (aac(6')-Ib) in Hermetia illucens larvae and frass. The presence of these genes suggests potential safety concerns regarding the reuse of frass in agriculture.
Interplay between ESKAPE Pathogens and Immunity in Skin Infections: An Overview of the Major Determinants of Virulence and Antibiotic Resistance.
The paper discusses the major determinants of virulence and antibiotic resistance in ESKAPE pathogens, focusing on genes such as vanA, poxtA, blaZ, mecA, blaKPC-2, blaKPC-3, armA, aacA4, aadA1, acrAB, blaCTX-M, blaGES, blaPER, blaSHV, blaTEM, blaVEB, aac(3')-Ia, ant(2’)-Ia, tetA, tetB, gyrA, parC, pmrC, pmrA, and pmrB, which are associated with resistance to various antibiotics.
HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes.
The HMD-ARG framework accurately identifies antibiotic resistance genes (ARGs) and predicts their resistance mechanisms, antibiotic classes, and gene mobility without relying on sequence databases. It successfully identified novel ARGs in human gut microbiota and experimentally validated several predicted ARGs, demonstrating its effectiveness in detecting resistance genes.
Characterization of antibiotic resistance profiles in Pseudomonas aeruginosa isolates from burn patients.
The study identifies blaCTX-M2, blaPER, and blaTEM as the primary ESBL genes in MDR P. aeruginosa isolates from burn patients in Algeria, highlighting the spread of these resistance genes in the region.
Dissemination of bla (NDM-) (1) Gene Among Several Klebsiella pneumoniae Sequence Types in Mexico Associated With Horizontal Transfer Mediated by IncF-Like Plasmids.
The study identifies the bla NDM-1 gene as a major contributor to carbapenem resistance in Klebsiella pneumoniae isolates in Mexico, along with other resistance genes such as bla TEM-1, bla CTX-M-15, aac(6')-Ib, and aac(3')-IIa. These genes were found to be carried on IncF-like plasmids, facilitating horizontal transfer among different sequence types.
Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe.
The study identifies various ESBL and AmpC beta-lactamase genes, including bla SHV-12, bla CTX-M-1, bla CTX-M-2, bla CTX-M-14, bla CTX-M-15, bla TEM-52, and bla CMY-2, along with the mcr-1 gene conferring colistin resistance in E. coli isolates from food animals in Europe.
Genetic mechanisms and correlated risk factors of antimicrobial-resistant ESKAPEE pathogens isolated in a tertiary hospital in Malaysia.
The study identified several AMR genes and mutations in ESKAPEE pathogens, including vanA, vanB, blaTEM, blaSHV, blaCTX-M, blaOXA, blaVEB, blaVIM, blaNDM, aac(6')-Ib, aadB, ermC, qnrS1, and gyrA mutations, highlighting the prevalence of multidrug resistance in these isolates.
High-Level Aminoglycoside Resistance in Human Clinical Klebsiella pneumoniae Complex Isolates and Characteristics of armA-Carrying IncHI5 Plasmids.
The study identified armA and multiple aminoglycoside resistance genes (AMEs) on a conjugative IncHI5 plasmid in a high-level aminoglycoside-resistant Klebsiella variicola isolate. The plasmid p2757-346 carried two copies of armA along with six AME genes, highlighting the potential for dissemination of these resistance determinants.
Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass Spectrometry.
The study developed a targeted LC-MS/MS assay for the rapid and accurate detection of aminoglycoside-modifying enzymes and 16S rRNA methyltransferases in E. coli and K. pneumoniae, demonstrating high sensitivity and specificity for detecting resistance mechanisms to gentamicin, tobramycin, and amikacin.
Serotyping and Antimicrobial Resistance Profile of Enteric Nontyphoidal Salmonella Recovered from Febrile Neutropenic Patients and Poultry in Egypt.
The study identified several antimicrobial resistance genes, including bla CTX-m, bla SHV, bla TEM, and aac (6')-Ib, in both human and poultry isolates of non-typhoidal Salmonella. These genes were found to confer resistance to various antibiotics such as cefotaxime, ampicillin, and gentamicin.
Genomic Insights into Drug Resistance and Virulence Platforms, CRISPR-Cas Systems and Phylogeny of Commensal E. coli from Wildlife.
The study identified various AMR genes in commensal E. coli strains from wildlife, including bla TEM-1, bla CTX-M-1, tet(A), tet(B), and several resistance gene cassettes in integrons. These genes were found to confer resistance to multiple antibiotics, highlighting the presence of AMR in wildlife E. coli populations.
WGS-Based Analysis of Carbapenem-Resistant Acinetobacter baumannii in Vietnam and Molecular Characterization of Antimicrobial Determinants and MLST in Southeast Asia.
The study identified several AMR genes in carbapenem-resistant Acinetobacter baumannii strains from Vietnam, including bla OXA-51-like, bla OXA-23, bla TEM-1, and others, highlighting the widespread resistance to beta-lactams, aminoglycosides, and other antibiotics.
Presence of β-Lactamase-producing Enterobacterales and Salmonella Isolates in Marine Mammals.
The study identified various β-lactamase genes, including bla CMY-2, bla TEM-1, bla SHV-33, bla SHV-11, bla CTX-M-15, bla OXA-1, and bla DHA-1, along with non-β-lactamase resistance genes such as sul2, strA, strB, tet(A), and sul1, in Enterobacterales and Salmonella isolates from marine mammals.
Molecular survey of aminoglycoside-resistant Acinetobacter baumannii isolated from tertiary hospitals in Qazvin, Iran.
The study identified several aminoglycoside resistance genes, including aph(3')-VI, aac(6')-Ib, aac(3)-II, aph(3')-Ia, and armA, in Acinetobacter baumannii isolates from Qazvin, Iran. These genes were associated with high levels of resistance to aminoglycosides such as gentamicin, tobramycin, and amikacin.
Exploring antimicrobial resistance to beta-lactams, aminoglycosides and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics.
The study identifies several beta-lactamases, aminoglycoside modifying enzymes, and efflux pumps involved in resistance to beta-lactams, aminoglycosides, and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics.
Exploring antimicrobial resistance to beta-lactams, aminoglycosides and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics.
The study identifies several beta-lactamases, aminoglycoside modifying enzymes, and efflux pumps involved in resistance to beta-lactams, aminoglycosides, and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics.
Generating Genotype-Specific Aminoglycoside Combinations with Ceftazidime/Avibactam for KPC-Producing Klebsiella pneumoniae.
The study identified aac(6')-Ib and aac(6')-Ib' as key aminoglycoside-modifying enzymes in KPC-producing Klebsiella pneumoniae, demonstrating that the choice of aminoglycoside should be guided by the specific AME present to optimize combination therapy with ceftazidime/avibactam.
Generating Genotype-Specific Aminoglycoside Combinations with Ceftazidime/Avibactam for KPC-Producing Klebsiella pneumoniae.
The study identified aac(6')-Ib and aac(6')-Ib' as key aminoglycoside-modifying enzymes in KPC-producing Klebsiella pneumoniae, demonstrating that the choice of aminoglycoside should be guided by the specific AME present to optimize combination therapy with ceftazidime/avibactam.
Isolation, Antimicrobial Resistance Phenotypes, and Virulence Genes of Bordetella bronchiseptica From Pigs in China, 2018-2020.
The study identified several antimicrobial resistance genes in Bordetella bronchiseptica isolates from pigs in China, including aac(3)-IV, aac6'-Ib, rmtA, blaTEM, blaSHV, oqxB, and tetA. These genes confer resistance to various antibiotics such as aminoglycosides, beta-lactams, fluoroquinolones, and tetracyclines.
Genomic Analysis of Enterococcus spp. Isolated From a Wastewater Treatment Plant and Its Associated Waters in Umgungundlovu District, South Africa.
The study identified various antibiotic resistance genes in Enterococcus spp. isolated from a wastewater treatment plant in South Africa, including genes conferring resistance to tetracycline, macrolides, aminoglycosides, and trimethoprim.
Emerging Treatment Options for Multi-Drug-Resistant Bacterial Infections.
The paper discusses emerging antimicrobial options for multidrug-resistant (MDR) bacterial infections, focusing on new antibiotics and their mechanisms of action against various resistant pathogens.
Transcriptomic Analysis of Drug-Resistance Acinetobacter baumannii under the Stress Condition Caused by Litsea cubeba L. Essential Oil via RNA Sequencing.
The study identifies several AMR genes in A. baumannii 17, including armA, sul2, tetB, and aac6'-1b, which confer resistance to beta-lactam, sulfonamide, tetracycline, and aminoglycoside antibiotics, respectively.
Genomic Analysis of Delftia tsuruhatensis Strain TR1180 Isolated From A Patient From China With In4-Like Integron-Associated Antimicrobial Resistance.
The study identified multiple antimicrobial resistance genes in Delftia tsuruhatensis TR1180, including blaOXA-118, oqxB, dfrA16, aac(6')-Ib3, aadA2, sul1, floR, and tet(G), which correspond to the strain's resistance to beta-lactams, fluoroquinolones, sulfonamides, aminoglycosides, and tetracyclines.
Genomic characterization of Achromobacter species isolates from chronic and occasional lung infection in cystic fibrosis patients.
The study identified several beta-lactamase genes (blaOXA-114, blaOXA-243, blaOXA-364, blaOXA-2) and other resistance genes (sul1, aac(6')-Ib) in Achromobacter species isolates, showing a species-specific distribution of blaOXA genes.
Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms.
The study identifies 20 top-ranked genetic determinants associated with antibiotic resistance in E. coli, including genes involved in cell wall metabolism, energy metabolism, and iron metabolism, using a combination of machine learning and genome-scale metabolic models.
Genomic insights into the diversity, virulence and resistance of Klebsiella pneumoniae extensively drug resistant clinical isolates.
The study identified various beta-lactamase genes, including blaSHV-11, blaKPC-2, and blaNDM-1, along with qnrS1, aadA1, dfrA1, and sul1, which contribute to multidrug resistance in extensively drug-resistant Klebsiella pneumoniae isolates.
Genetic Background and Antibiotic Resistance Profiles of K. pneumoniae NDM-1 Strains Isolated from UTI, ABU, and the GI Tract, from One Hospital in Poland, in Relation to Strains Nationally and Worldwide.
The study identified eleven antimicrobial resistance genes in K. pneumoniae NDM-1 strains, including bla NDM-1, bla CTX-M-15, bla OXA-1, and others, contributing to multidrug resistance. The strains exhibited resistance to various antibiotics, including carbapenems, cephalosporins, fluoroquinolones, and aminoglycosides.
Role of Aminoglycoside-Modifying Enzymes (AMEs) in Resistance to Aminoglycosides among Clinical Isolates of Pseudomonas aeruginosa in the North of Iran.
The study identified several aminoglycoside-modifying enzyme-encoding genes, including AAC(6')-Ib, AAC(6')-IIa, APH(3')-IIb, ANT(3'')-Ia, and ANT(2'')-Ia, which are associated with resistance to aminoglycosides in Pseudomonas aeruginosa isolates from the north of Iran.
Genetic Diversity of Multidrug-Resistant Pseudomonas aeruginosa Isolates Carrying bla (VIM-2) and bla (KPC-2) Genes That Spread on Different Genetic Environment in Colombia.
The study identifies bla(VIM-2) and bla(KPC-2) genes in multidrug-resistant Pseudomonas aeruginosa isolates from Colombia, highlighting their diverse genetic environments and mechanisms of resistance.
Coexistence of aminoglycoside resistance genes in CTX-M-producing isolates of Klebsiella pneumoniae in Bushehr province, Iran.
The study identified the presence of aac(3)-IIa and aac(6′)-Ib genes in CTX-M-producing Klebsiella pneumoniae isolates, indicating coexistence of aminoglycoside resistance mechanisms.
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014.
The study identified several AMR genes and mutations in Pseudomonas aeruginosa isolates from the Philippines, including bla VIM-2, bla VIM-6, bla NDM-1, bla IMP-26, aac(6')-Ib, aac(6')-Ib4, aac(6')-IIa, aac(6')-31, ant(2")-Ia, aadA1, acc(6')-Ib, qnrVC, gyrA, parC, oprD, nalC, and nalD. These genes and mutations were associated with resistance to carbapenems, aminoglycosides, and fluoroquinolones.
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014.
The study identified several AMR genes and mutations in Pseudomonas aeruginosa isolates from the Philippines, including bla VIM-2, bla VIM-6, bla NDM-1, bla IMP-26, aac(6')-Ib, aac(6')-Ib4, aac(6')-IIa, aac(6')-31, ant(2")-Ia, aadA1, acc(6')-Ib, qnrVC, gyrA, parC, oprD, nalC, and nalD. These genes and mutations were associated with resistance to carbapenems, aminoglycosides, and fluoroquinolones.
Comparative analysis of genetic characterization of β-lactam-resistant Escherichia coli from bulk tank milk in Korea.
The study identified blaOXA-1 and blaTEM-1 as the dominant β-lactamase genes in β-lactam-resistant E. coli isolates from bulk tank milk in Korea. Additionally, aac(6')-Ib, aac(3)-II, and aph(3'')-Ib were found to confer resistance to aminoglycosides.
Amikacin in combination with zinc pyrithione prevents growth of a multidrug-resistant carbapenem-resistant Klebsiella pneumoniae isolate.
The study identifies aminoglycoside resistance mediated by aac(6')-Ib and beta-lactam resistance conferred by blaTEM-1, blaSHV-11, blaSHV-12, and blaKPC-2 in a multidrug-resistant CRKP isolate. The combination of amikacin and zinc pyrithione effectively overcomes amikacin resistance.
A One-Health Genomic Investigation of Gentamicin Resistance in Salmonella from Human and Chicken Sources in Canada, 2014 to 2017.
The study identified several aminoglycoside-modifying enzymes, including aac(3)-VIa, aac(3)-IId, aac(3)-Id, aac(3)-IVa, aac(3)-IIa, ant(2′′)-Ia, aac(6′)-Ib-cr, aadA2, aadA7, aadA1, ant(3′′)-Ia, aac(6′)-Ib3, and rmtB, as key contributors to gentamicin resistance in Salmonella isolates from both human and chicken sources in Canada.
Antimicrobial Resistance and Comparative Genome Analysis of Klebsiella pneumoniae Strains Isolated in Egypt.
The study identifies multiple antimicrobial resistance genes in the multidrug-resistant K. pneumoniae strain KPE16, including bla NDM-1, bla CTX-M-15, and various aminoglycoside, sulfonamide, and tetracycline resistance genes. Additionally, chromosomal mutations in ompK36, ompK37, and acrR contribute to resistance.
Antimicrobial Resistance and Type III Secretion System Virulotypes of Pseudomonas aeruginosa Isolates from Dogs and Cats in Primary Veterinary Hospitals in Japan: Identification of the International High-Risk Clone Sequence Type 235.
The study identifies various AMR genes and mutations in P. aeruginosa isolates from dogs and cats in Japan, highlighting the presence of high-risk clones like ST235 and the role of genetic factors in carbapenem and fluoroquinolone resistance.
A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage.
The study identified various AMR genes in Enterobacterales isolates from livestock, highlighting the association between AMR prevalence and antimicrobial usage, with pigs being a major reservoir of AMR genes.
Aminoglycoside-resistance gene signatures are predictive of aminoglycoside MICs for carbapenem-resistant Klebsiella pneumoniae.
The study identifies aminoglycoside-resistance genes such as aac(6')-Ib, aac(6')-Ib', aac(3)-II, aac(3)-IV, ant(2'')-I, aph(3')-I, and rmtF as significant predictors of aminoglycoside MICs in carbapenem-resistant Klebsiella pneumoniae.
Aminoglycoside-resistance gene signatures are predictive of aminoglycoside MICs for carbapenem-resistant Klebsiella pneumoniae.
The study identifies aminoglycoside-resistance genes such as aac(6')-Ib, aac(6')-Ib', aac(3)-II, aac(3)-IV, ant(2'')-I, aph(3')-I, and rmtF as significant predictors of aminoglycoside MICs in carbapenem-resistant Klebsiella pneumoniae.
Genomic Analysis of Ciprofloxacin-Resistant Salmonella enterica Serovar Kentucky ST198 From Spanish Hospitals.
The study identified several AMR genes and mutations associated with ciprofloxacin resistance in Salmonella enterica serovar Kentucky ST198 isolates from Spanish hospitals. Key findings include the presence of blaTEM-1B, aacA5, aadA7, sul1, tet(A), catA1, and aac(6′)-Ib genes, along with mutations in gyrA (Ser83Phe) and parC (Thr57Ser, Ser80Ile).
Danofloxacin Treatment Alters the Diversity and Resistome Profile of Gut Microbiota in Calves.
Danofloxacin treatment altered the gut microbiota diversity and resistome profile in calves, increasing the frequency and host range of several antimicrobial resistance genes (ARGs) such as aac(6')-Ib, ant9, tet40, tetW, ermF, tetL, and tetX.
Bacteriological and histopathological findings in cetaceans that stranded in the Philippines from 2017 to 2018.
The study identified multiple antibiotic-resistant bacteria from cetaceans stranded in the Philippines, highlighting the presence of resistance genes such as ermB, aadA, aac(6')-Ib, blaTEM, blaCTX-M, blaSHV, blaOXA, qnrS1, tet(A), and mph(A).
Deciphering Multidrug-Resistant Acinetobacter baumannii from a Pediatric Cancer Hospital in Egypt.
The study identified various AMR genes and mutations in multidrug-resistant Acinetobacter baumannii isolates from a pediatric cancer hospital in Egypt, highlighting the presence of bla NDM, bla OXA-23-like, bla OXA-51-like, and other resistance genes, along with mutations in pmrA and lptF contributing to colistin resistance.
The First Saudi Study Investigating the Plasmid-borne Aminoglycoside and Sulfonamide Resistance among Acinetobacter baumannii Clinical Isolates Genotyped by RAPD-PCR: the Declaration of a Novel Allelic Variant Called aac(6')-SL and Three Novel Mutations in the sul1 Gene in the Acinetobacter Plasmid (s).
The study identified a novel allelic variant of aac(6')-Ib called aac(6')-SL and three novel mutations in the sul1 gene among Acinetobacter baumannii clinical isolates in Saudi Arabia.
Antimicrobial susceptibility, multilocus sequence typing, and virulence of listeria isolated from a slaughterhouse in Jiangsu, China.
The study identified tetracycline resistance genes tetA and tetM, erythromycin resistance genes ermA, ermB, and ermC, and the aminoglycoside resistance gene aac(6')-Ib in Listeria isolates from a slaughterhouse in Jiangsu, China.
Effect of Imipenem and Amikacin Combination against Multi-Drug Resistant Pseudomonas aeruginosa.
The study identified blaIMP and aac(6')-Ib as the primary resistance genes contributing to imipenem and amikacin resistance in Pseudomonas aeruginosa, respectively.
Comparison of antimicrobial resistance and molecular characterization of Escherichia coli isolates from layer breeder farms in Korea.
The study identified several AMR genes in E. coli isolates from layer breeder farms in Korea, including bla TEM-1, tetA, tetB, qnrB, qnrS, sul1, sul2, aac(3)-II, and aac(6')-Ib. These genes conferred resistance to various antibiotics such as beta-lactams, tetracyclines, quinolones, sulfonamides, and aminoglycosides.
Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.
The study identified several AMR genes, including bla CTX-M-15, bla NDM-1, rmtC, aac(6')-Ib, aac(3)-II, aph(3′′)-Ib, oqxA, oqxB, qnrB1, qnrS1, sul1, sul2, and dfrA, which were associated with resistance to various antibiotics in Klebsiella pneumoniae isolates from the Philippines.
Mouse pneumonia model by Acinetobacter baumannii multidrug resistant strains: Comparison between intranasal inoculation, intratracheal instillation and oropharyngeal aspiration techniques.
The study identified various AMR genes in two multidrug-resistant Acinetobacter baumannii strains, ACC001 and ACC002, including aminoglycoside resistance genes, tetracycline resistance genes, beta-lactamases, and sulfonamide resistance genes. These genes contribute to resistance against multiple antibiotics such as gentamicin, tobramycin, tetracycline, penicillins, cephalosporins, and sulfonamides.
Occurrence and spread of antibiotic-resistant bacteria on animal farms and in their vicinity in Poland and Ukraine-review.
The review highlights the presence of antibiotic-resistant bacteria and resistance genes in the environments of animal farms in Poland and Ukraine, emphasizing the spread of multidrug-resistant strains such as MRSA and Salmonella. Key resistance genes identified include blaTEM, blaPSE, floR, tetA, tetB, tetC, tetG, cat1, dfrA1, dfrA5, dfrA7, dfrA12, dfrA17, sul1, sul2, sul3, ermB, tetL, tetW, tetM, blaZ, mecA, qnrS1, qnrS3, qnrB10, qnrB19, blaCTX-M-25, and blaOXA-21.
Genomic Characterization of Extensively Drug-Resistant NDM-Producing Acinetobacter baumannii Clinical Isolates With the Emergence of Novel bla (ADC-257).
The study identified several AMR genes, including novel bla ADC-257, and mutations in gyrA and parC associated with fluoroquinolone resistance in extensively drug-resistant NDM-producing Acinetobacter baumannii isolates.
Clinical outcomes, molecular epidemiology and resistance mechanisms of multidrug-resistant Pseudomonas aeruginosa isolated from bloodstream infections from Qatar.
The study identified several AMR genes and mutations in MDR P. aeruginosa isolates from Qatar, including blaVIM, blaOXA-50, aac(6')-Ib, aadA, ant(2')-Ia, aph(3')-IIb, qnrS1, crpP, gyrA(T83I), parC(S83I), parE(A473V), pbp3(D350N, S357N), and ompK37(M70I, M128I). These resistance mechanisms contribute to the multidrug-resistant phenotype observed in the isolates.
Pan-Resistome Characterization of Uropathogenic Escherichia coli and Klebsiella pneumoniae Strains Circulating in Uganda and Kenya, Isolated from 2017-2018.
The study identified various AMR genes in uropathogenic E. coli and K. pneumoniae strains from Uganda and Kenya, highlighting the prevalence of multidrug-resistant (MDR) and extended-spectrum beta-lactamase (ESBL)-producing strains.
Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147.
The study identifies multiple AMR genes and mutations in the pandrug-resistant K. pneumoniae strain DJ, including carbapenemases (bla NDM-5, bla OXA-181, bla CTX-M-15), aminoglycoside resistance genes (rmtB, rmtF, aac(6')-Ib, aadA2, strAB), sulfonamide resistance genes (sul1, sul2), dihydrofolate reductase (dfrA12), polymyxin resistance gene (mgrB), tetracycline resistance gene (ramR), chloramphenicol resistance genes (catA2, catB), fosfomycin resistance gene (fosA), and macrolide resistance genes (mphA, ermB). Mutations in gyrA, parC, ompK35, ompK36, and ramR contribute to resistance to fluoroquinolones, polymyxins, tetracyclines, and other antibiotics.
Plethora of Resistance Genes in Carbapenem-Resistant Gram-Negative Bacteria in Greece: No End to a Continuous Genetic Evolution.
The study identified a variety of resistance genes in carbapenem-resistant Gram-negative bacteria, including bla KPC, bla NDM, bla VIM, and others, highlighting the complex genetic diversity of these pathogens.
Antibiotic resistance genes in gut of breast-fed neonates born by caesarean section originate from breast milk and hospital ward air.
The study identifies multiple antibiotic resistance genes (ARGs) in the gut of breast-fed neonates born via cesarean section, primarily originating from breast milk and hospital ward air. Key ARGs include mecA, blaTEM, ampC, tetM, ermB, sul2, and aac(6)-Ib, which were detected in S. epidermidis isolates from neonatal faeces, colostrum, and ward air.
Evaluation of phenotypic and genotypic patterns of aminoglycoside resistance in the Gram-negative bacteria isolates collected from pediatric and general hospitals.
The study identified several aminoglycoside resistance genes, including aac(6')-Ib, aph(3')-VIe, aadA15, aph(3')-Ia, aph(3')-II, and aph(6), which were prevalent among Gram-negative bacteria isolates in Iran.
Characterization of a Conjugative Multidrug Resistance IncP-2 Megaplasmid, pPAG5, from a Clinical Pseudomonas aeruginosa Isolate.
The study characterizes a conjugative multidrug resistance IncP-2 megaplasmid, pPAG5, from a clinical Pseudomonas aeruginosa isolate, identifying multiple AMR genes and resistance regions.
Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial.
Early-life broad-spectrum antibiotics alter the infant gut microbiome and resistome, with amoxicillin + cefotaxime having the most significant impact on AMR gene profiles.
First Description of Ceftazidime/Avibactam Resistance in a ST13 KPC-70-Producing Klebsiella pneumoniae Strain from Portugal.
The study reports the first description of ceftazidime/avibactam resistance in a ST13 KPC-70-producing Klebsiella pneumoniae strain from Portugal. The strain was found to harbor the blaKPC-70 gene, a variant of blaKPC-3 with two amino acid substitutions (D179Y and T263A), which conferred resistance to several β-lactam antibiotics.
Diversity in the Characteristics of Klebsiella pneumoniae ST101 of Human, Environmental, and Animal Origin.
The study identified several AMR genes and mutations in K. pneumoniae ST101 strains, including aac(3)-IIa, aac(6')-Ib, blaCTX-M-15, blaOXA-48, and blaNDM-1, as well as mutations in gyrA and parC contributing to fluoroquinolone resistance, and mutations in mgrB leading to colistin resistance.
Pan-Genome Analysis of Delftia tsuruhatensis Reveals Important Traits Concerning the Genetic Diversity, Pathogenicity, and Biotechnological Properties of the Species.
The study identifies multiple antimicrobial resistance genes in Delftia tsuruhatensis, including aminoglycoside, sulfonamide, trimethoprim, tetracycline, and phenicol resistance genes, indicating the potential for multidrug resistance in this species.
Genomic characterization of multidrug-resistant Salmonella serovar Kentucky ST198 isolated in poultry flocks in Spain (2011-2017).
The study identified multiple antimicrobial resistance genes in multidrug-resistant Salmonella serovar Kentucky ST198 isolates from Spain, including genes conferring resistance to aminoglycosides, beta-lactams, sulfonamides, tetracyclines, trimethoprim, and colistin.
Antibiotic Combination Therapy: A Strategy to Overcome Bacterial Resistance to Aminoglycoside Antibiotics.
The paper discusses the mechanisms of bacterial resistance to aminoglycoside antibiotics, including enzymatic modification, decreased drug accumulation, and modification of drug targets. It highlights the importance of understanding these mechanisms to develop strategies to overcome resistance.
Global population structure of the Serratia marcescens complex and identification of hospital-adapted lineages in the complex.
The study identified multiple antimicrobial resistance (AMR) genes and mutations in the Serratia marcescens complex, highlighting the presence of hospital-adapted lineages with a high prevalence of multidrug-resistant (MDR) strains. Key AMR genes include blaCTX-M, blaNDM, blaOXA, qnrS1, tet(A), aac(6')-Ib, mph(A), erm(B), aadA, floR, sul1, and dfrA12, which confer resistance to various antibiotics such as beta-lactams, fluoroquinolones, tetracyclines, aminoglycosides, macrolides, florfenicol, sulfonamides, and trimethoprim.
Emergence of Carbapenem-Resistant ST244, ST292, and ST2446 Pseudomonas aeruginosa Clones in Burn Patients in Yunnan Province.
Establishment of Epidemiological Cut-Off Values and the Distribution of Resistance Genes in Aeromonas hydrophila and Aeromonas veronii Isolated from Aquatic Animals.
The study identified several tetracycline resistance genes (tetA, tetB, tetD, tetE), florfenicol resistance gene (floR), chloramphenicol resistance gene (cat), quinolone resistance gene (qnrS), and aminoglycoside resistance genes (aac(6')-1b, strA-strB) in Aeromonas hydrophila and Aeromonas veronii isolates from aquatic animals.
Whole Genome Sequence Analysis of Multidrug Resistant Escherichia coli and Klebsiella pneumoniae Strains in Kuwait.
The study identified multiple AMR genes in multidrug-resistant E. coli and K. pneumoniae isolates from Kuwait, including beta-lactamases (blaKPC-2, blaCTX-M-15, blaOXA-1, blaCMY-4, blaTEM), aminoglycoside-modifying enzymes (aac(3)-IIa, aph(6)-Id, aadA5), sulfonamide resistance genes (sul1, sul2), quinolone resistance genes (gyrA_D87N, qnrB1), and others. Colistin resistance was linked to the pmrB_R256G mutation.
Whole Genome Sequence Analysis of Multidrug Resistant Escherichia coli and Klebsiella pneumoniae Strains in Kuwait.
The study identified multiple AMR genes in multidrug-resistant E. coli and K. pneumoniae isolates from Kuwait, including beta-lactamases (blaKPC-2, blaCTX-M-15, blaOXA-1, blaCMY-4, blaTEM), aminoglycoside-modifying enzymes (aac(3)-IIa, aph(6)-Id, aadA5), sulfonamide resistance genes (sul1, sul2), quinolone resistance genes (gyrA_D87N, qnrB1), and others. Colistin resistance was linked to the pmrB_R256G mutation.
The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2019-2020.
The report highlights the presence of various antimicrobial resistance genes such as blaVIM-1, blaTEM-1B, blaTEM-1C, and cfr in different bacterial isolates, indicating resistance to carbapenems, beta-lactams, and macrolides/lincosamides/streptogramin B.
Community Fecal Carriage and Molecular Epidemiology of Extended-Spectrum β-Lactamase- and Carbapenemase-Producing Escherichia coli from Healthy Children in the Central South China.
The study identified various extended-spectrum beta-lactamase (ESBL) genes, including bla CTX-M-14, bla CTX-M-15, bla CTX-M-27, and others, as well as the carbapenemase gene bla NDM-1 in Escherichia coli isolates from healthy children in China. Additionally, the colistin resistance gene mcr-1 was detected in one ESBL-EC isolate.
Prevalence and Molecular Typing of Carbapenemase-Producing Enterobacterales among Newborn Patients in Italy.
The study identified various carbapenemase genes, including bla NDM, bla KPC, bla VIM, and bla OXA-48, along with other resistance genes such as aac(6')-Ib3, aph(3')-VI, rmtC, bla CMY-6, and bla CTX-M-15, in carbapenemase-producing Enterobacterales isolated from newborn patients in Italy.
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen.
The study identifies multiple AMR genes and mutations in Klebsiella pneumoniae isolates, including bla CTX-M-15, bla IMP-4, bla OXA-48, qnrB1, qnrS1, aac(6')-Ib-cr, rmtB, aac(6')-Ib4, aadA2, ant(2")-Ia, ermB, arr-2, dfrA14, sul2, and sul1, which confer resistance to various antibiotics such as cephalosporins, carbapenems, fluoroquinolones, aminoglycosides, and sulfonamides.
A review of the emergence of antibiotic resistance in bioaerosols and its monitoring methods.
This review highlights the presence of various antibiotic resistance genes (ARGs) in bioaerosols, emphasizing their role in the spread of antibiotic resistance through horizontal gene transfer. Key ARGs identified include those conferring resistance to beta-lactams, tetracyclines, sulfonamides, quinolones, and macrolides.
Cross-Sectional Survey of Antibiotic Resistance in Extended Spectrum β-Lactamase-Producing Enterobacteriaceae Isolated from Pigs in Greece.
The study identified a high prevalence of ESBL-producing Enterobacteriaceae in Greek pigs, with a focus on resistance mechanisms involving bla CTX-M1/15, bla TEM, and bla SHV genes, as well as resistance to fluoroquinolones, aminoglycosides, sulfonamides, trimethoprim, macrolides, and colistin.
Occurrence of bla(NDM-1)-Positive Providencia spp. in a Pig Farm of China.
Four bla NDM-1-positive Providencia strains were identified in a pig farm in China, showing multidrug resistance and carrying additional resistance genes such as bla OXA-10, bla TEM-116, and others.
Occurrence of antibiotics and bacterial resistance genes in wastewater: resistance mechanisms and antimicrobial resistance control approaches.
The study identifies several AMR genes and mutations associated with resistance to various antibiotics in wastewater environments, highlighting the role of these genes in the spread of antimicrobial resistance.
Genomic surveillance for multidrug-resistant or hypervirulent Klebsiella pneumoniae among United States bloodstream isolates.
The study identified various antimicrobial resistance genes and mutations in Klebsiella pneumoniae bloodstream isolates, highlighting the presence of multidrug-resistant and hypervirulent strains in the United States.
Using Targeted Liquid Chromatography-Tandem Mass Spectrometry to Rapidly Detect β-Lactam, Aminoglycoside, and Fluoroquinolone Resistance Mechanisms in Blood Cultures Growing E. coli or K. pneumoniae.
The study developed and validated a targeted LC-MS/MS assay for the rapid detection of β-lactam, aminoglycoside, and fluoroquinolone resistance mechanisms in blood cultures growing E. coli or K. pneumoniae. The assay successfully detected various resistance genes including β-lactamases (SHV, TEM, CTX-M-1-like, OXA-1, CMY-2-like, cAmpC, KPC, OXA-48, NDM, VIM), aminoglycoside-modifying enzymes (AAC(3)-Ia, AAC(3)-II, AAC(3)-IV, AAC(3)-VI, AAC(6′)-Ib, ANT(2′′)-I, APH(3′)-VI), 16S-RMTases (ArmA, RmtB, RmtC, RmtF), and quinolone resistance mechanisms (QnrA, QnrB, AAC(6′)-Ib-cr, and wildtype QRDR of GyrA).
Aminoglycoside-Modifying Enzymes Are Sufficient to Make Pseudomonas aeruginosa Clinically Resistant to Key Antibiotics.
The study demonstrates that aminoglycoside-modifying enzymes (AMEs) are sufficient to confer clinical resistance to key antibiotics in Pseudomonas aeruginosa. Specifically, ant(2")-Ia, aac(6')-Ib3, and aph(3')-VIa were shown to significantly increase the minimum inhibitory concentrations (MICs) of tobramycin, gentamicin, and amikacin, respectively.
Molecular characterization of extended spectrum cephalosporin resistant Escherichia coli isolated from livestock and in-contact humans in Southeast Nigeria.
The study identified four variants of bla CTX-M (CTX-M-15, CTX-M-55, CTX-M-64, and CTX-M-65) in extended-spectrum cephalosporin-resistant Escherichia coli from livestock and in-contact humans in Southeast Nigeria. Other AMR genes such as bla TEM-1b, aac 3-IId, qnr S1, and sul 2 were also characterized.
Molecular characterization of extended spectrum cephalosporin resistant Escherichia coli isolated from livestock and in-contact humans in Southeast Nigeria.
The study identified four variants of bla CTX-M (CTX-M-15, CTX-M-55, CTX-M-64, and CTX-M-65) in extended-spectrum cephalosporin-resistant Escherichia coli from livestock and in-contact humans in Southeast Nigeria. Other AMR genes such as bla TEM-1b, aac 3-IId, qnr S1, and sul 2 were also characterized.
In Vitro Activity of Sulbactam-Durlobactam against Carbapenem-Resistant Acinetobacter baumannii Clinical Isolates: A Multicentre Report from Italy.
The study evaluated the in vitro activity of sulbactam-durlobactam (SUL-DUR) against 141 carbapenem-resistant A. baumannii isolates. It identified several resistance genes including blaOXA-20, blaOXA-58, blaOXA-66, blaADC-25, aac(6')-Ib3, aac(6')-Ib-cr, and mutations in gyrA (S81L) and parC (V104I, D105E). Additionally, mutations in PBP3 (Q488K and Y528H) were found in SUL-DUR resistant isolates.
Emergence and multi-lineages of carbapenemase-producing Acinetobacter baumannii-calcoaceticus complex from canine and feline origins.
The study identifies blaOXA-23 as a prevalent carbapenemase gene in carbapenem-resistant Acinetobacter baumannii-calcoaceticus complex isolates from dogs and cats in Thailand. Additionally, several tetracycline and aminoglycoside resistance genes, including tet(B), tet(39), strA, strB, aac(3)-Ia, aac(3)-IIa, aac(6')-Im, aac(6')-Ib, ant(2'')-Ia, and aph(3')-VI, were detected.
Hitherto-Unnoticed Self-Transmissible Plasmids Widely Distributed among Different Environments in Japan.
The study identified new subgroups of IncP/P-1 and PromA plasmids, including antibiotic resistance genes such as blaIMP-1, blaKPC-2, mcr-1, and various tetracycline and aminoglycoside resistance genes.
Multidrug-Resistant Bacteria: Their Mechanism of Action and Prophylaxis.
The paper reviews the mechanisms of multidrug resistance in bacteria, focusing on resistance mechanisms such as beta-lactamases, vancomycin resistance genes, and other resistance determinants in both Gram-positive and Gram-negative bacteria.
Characterization of Carbapenemase-Producing Klebsiella pneumoniae Isolates from Two Romanian Hospitals Co-Presenting Resistance and Heteroresistance to Colistin.
The study identifies multiple AMR genes and mutations in carbapenemase-producing Klebsiella pneumoniae isolates, including bla NDM-1, bla OXA-48, and various aminoglycoside-modifying enzymes, as well as mutations in mgrB, gyrA, parC, and porin genes associated with colistin and fluoroquinolone resistance.
Epidemiology, Mechanisms of Resistance and Treatment Algorithm for Infections Due to Carbapenem-Resistant Gram-Negative Bacteria: An Expert Panel Opinion.
The paper discusses the mechanisms of resistance in carbapenem-resistant Gram-negative bacteria, highlighting the role of various beta-lactamases such as blaOXA-51, blaOXA-23, blaOXA-24, blaOXA-48, blaKPC, blaNDM, blaVIM, and blaIMP, as well as aminoglycoside modifying enzymes like aac(6')-Ib and aadA, and quinolone resistance genes such as qnrS1.
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion.
Phage-plasmids (P-Ps) carry a variety of antibiotic resistance genes (ARGs), including beta-lactamases, aminoglycoside-modifying enzymes, and carbapenemases. These genes are often located in integrons and are associated with transposable elements. P-Ps can be induced by mitomycin C and can transfer resistance genes through lysogenic conversion.
The resistomes of Mycobacteroides abscessus complex and their possible acquisition from horizontal gene transfer.
The study identifies numerous AMR genes in Mycobacteroides abscessus complex, highlighting the widespread presence of resistance to multiple antibiotic classes, including beta-lactams, aminoglycosides, glycopeptides, and others. Key findings include the detection of beta-lactamases like blaLAP-1 and blaTLA-2, 23S rRNA methyltransferases such as erm(33), erm(43), and erm(44), and various aminoglycoside modifying enzymes. Additionally, vancomycin resistance genes like vanA, vanB, and vanC were identified, along with efflux pump genes contributing to multidrug resistance.
The resistomes of Mycobacteroides abscessus complex and their possible acquisition from horizontal gene transfer.
The study identifies numerous AMR genes in Mycobacteroides abscessus complex, highlighting the widespread presence of resistance to multiple antibiotic classes, including beta-lactams, aminoglycosides, glycopeptides, and others. Key findings include the detection of beta-lactamases like blaLAP-1 and blaTLA-2, 23S rRNA methyltransferases such as erm(33), erm(43), and erm(44), and various aminoglycoside modifying enzymes. Additionally, vancomycin resistance genes like vanA, vanB, and vanC were identified, along with efflux pump genes contributing to multidrug resistance.
In Vitro and In Vivo Effect of Amikacin and Imipenem Combinations against Multidrug-Resistant E. coli.
The study identifies bla-IMP and aac(6')-Ib as the primary resistance genes in multidrug-resistant E. coli isolates, demonstrating their role in conferring resistance to carbapenems and aminoglycosides, respectively.
Molecular Basis of Non-β-Lactam Antibiotics Resistance in Staphylococcus aureus.
The paper discusses the molecular mechanisms of resistance to non-beta-lactam antibiotics in Staphylococcus aureus, highlighting the roles of various genes and mutations in conferring resistance to macrolides, lincosamides, aminoglycosides, glycopeptides, oxazolidinones, lipopeptides, fluoroquinolones, and other antibiotics.
Whole-Genome Sequencing-Based Species Classification, Multilocus Sequence Typing, and Antimicrobial Resistance Mechanism Analysis of the Enterobacter cloacae Complex in Southern China.
The study identified 80 antibiotic resistance genes in 172 Enterobacter cloacae complex isolates, with a focus on beta-lactamases, aminoglycosides, and fluoroquinolones. Key genes included blaACT-2, blaACT-3, blaACT-6, blaACT-9, blaACT-12, blaTEM-1D, blaCTX-M-3, blaSHV-12, blaNDM-1, blaNDM-5, blaIMP-1, blaIMP-4, blaIMP-26, blaKPC-2, qnrS2, qnrE1, aac(6')-Ib, aac(6')-IIc, aph(3')-Ib, aph(6)-Id, aadA, sul2, dfrA12, tetA, ereA, floR, catA2, mcr-10, arr-6, and fosA3.
Antimicrobial resistance: mechanisms and implications
The review discusses various molecular mechanisms of antibiotic resistance, including beta-lactamases, aminoglycoside-modifying enzymes, tetracycline resistance genes, and efflux pumps, highlighting their roles in conferring resistance to multiple antibiotics.
Molecular Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae in a Tertiary Hospital in Northern China.
The study identified bla KPC-2, bla GES, bla NDM-1, and bla IMP as the main carbapenemase genes in CRKP isolates. Additionally, various ESBL genes, aminoglycoside resistance genes, and PMQR genes were detected.
Rothia nasimurium as a Cause of Disease: First Isolation from Farmed Chickens.
Rothia nasimurium was isolated from chickens for the first time and found to exhibit multidrug resistance, carrying 13 resistance genes including bla TEM, bla CTX-M, mecA, sul1, sul2, sul3, aac(6′)-Ib, gyrA, aph(3′)-Ia, tet(A), tetM, and ermB.
Molluscs-A ticking microbial bomb.
The paper discusses the presence of antibiotic resistance genes (ARGs) in bivalve molluscs, highlighting the spread of resistance to various antibiotics such as colistin, beta-lactams, fluoroquinolones, and tetracyclines. It emphasizes the role of bivalve aquacultures in the dissemination of ARGs and the potential risks to human health through the food chain.
Combining analytical epidemiology and genomic surveillance to identify risk factors associated with the spread of antimicrobial resistance in Salmonella enterica subsp. enterica serovar Heidelberg.
The study identified multiple AMR genes in Salmonella enterica subsp. enterica serovar Heidelberg, including bla CMY-2, bla TEM-1A, bla TEM-1B, bla TEM-214, mcr -9, and others, highlighting the prevalence of resistance to beta-lactams, aminoglycosides, and other antimicrobial agents.
Hypervirulent Klebsiella pneumoniae Causing Neonatal Bloodstream Infections: Emergence of NDM-1-Producing Hypervirulent ST11-K2 and ST15-K54 Strains Possessing pLVPK-Associated Markers.
The study identifies NDM-1 and NDM-5 carbapenemases, aac(6')-ib, qnrS1, oqxA, oqxB, rmpA, rmpA2, iroBCDEN, iucABCDiutA, and peg-344 as key AMR and virulence factors in hypervirulent Klebsiella pneumoniae strains causing neonatal bloodstream infections.
Prevalence and abundance of antibiotic-resistant genes in culturable bacteria inhabiting a non-polar passu glacier, karakorum mountains range, Pakistan.
The study identified multiple antibiotic-resistant genes (ARGs) in culturable bacteria from a non-polar glacier in Pakistan, highlighting the presence of resistance mechanisms against various antibiotics.
In silico analyses of diversity and dissemination of antimicrobial resistance genes and mobile genetics elements, for plasmids of enteric pathogens.
The study identifies a diverse array of antimicrobial resistance (AMR) genes across various plasmid replicon types in enteric pathogens, highlighting the prevalence of resistance genes in plasmids such as IncHI2, IncN, IncA/C, IncP, IncHI1, and IncFIA. Key AMR genes include aac(3)-IId, aac(3)-IIg, aac(6')-Ib3, aadA1, aadA5, aph(3'')-Ib, bla CMY-2, bla CTX-M-27, bla NDM-1, mcr-9.1, and others, which confer resistance to antibiotics such as gentamicin, cephalosporins, carbapenems, colistin, and tetracycline.
Metagenomic Insight into Microbiome and Antibiotic Resistance Genes of High Clinical Concern in Urban and Rural Hospital Wastewater of Northern India Origin: a Major Reservoir of Antimicrobial Resistance.
The study identified several clinically relevant antibiotic resistance genes (ARGs) in hospital wastewater samples from northern India, including bla NDM-1, mcr-5.1, aac(6')-Ib, aph(3')-I, erm, and sul1. These genes were found to confer resistance to various antibiotics such as carbapenems, colistin, aminoglycosides, macrolides, lincosamides, streptogramin B, and sulfonamides.
Aeromonas hydrophila ST251 and Aeromonas dhakensis are major emerging pathogens of striped catfish in Vietnam.
The study identifies antibiotic resistance genes such as sul1, dfrA1, tetA, qnrS2, aac(6')-Ib4, arr-2, blaAQU, blaOXA-726, cphA3, and cepH in Aeromonas dhakensis and Aeromonas hydrophila isolates from striped catfish in Vietnam, highlighting the emergence of multidrug-resistant strains.
Epidemiology and Genetic Characteristics of Carbapenem-Resistant Escherichia coli in Chinese Intensive Care Unit Analyzed by Whole-Genome Sequencing: a Prospective Observational Study.
The study identified bla KPC-2 and bla NDM-5 as the main carbapenem resistance genes in carbapenem-resistant Escherichia coli (CREC) isolates. Additionally, various other resistance genes were detected, including extended-spectrum beta-lactamases (CTX-M-14, CTX-M-15, CTX-M-27, CTX-M-3, OXA-1, OXA-10, TEM-1), aminoglycoside resistance genes (aac(3)-IId, aac(3)-Iva, aac(6′)-Ib-AKT, aac(6′)-Ib-D181Y, aadA1, aadA2, aadA5, aph(3″)-Ib, aph(3′)-Ia, aph(4)-Ia, aph(6)-Id), quinolone resistance genes (qnrS1, qnrS2), tetracycline resistance genes (oqxA10, oqxB17), fosfomycin resistance gene (fosA3), and chloramphenicol resistance genes (cmlA1, cmlA5).
Epidemiology and Genetic Characteristics of Carbapenem-Resistant Escherichia coli in Chinese Intensive Care Unit Analyzed by Whole-Genome Sequencing: a Prospective Observational Study.
The study identified bla KPC-2 and bla NDM-5 as the main carbapenem resistance genes in carbapenem-resistant Escherichia coli (CREC) isolates. Additionally, various other resistance genes were detected, including extended-spectrum beta-lactamases (CTX-M-14, CTX-M-15, CTX-M-27, CTX-M-3, OXA-1, OXA-10, TEM-1), aminoglycoside resistance genes (aac(3)-IId, aac(3)-Iva, aac(6′)-Ib-AKT, aac(6′)-Ib-D181Y, aadA1, aadA2, aadA5, aph(3″)-Ib, aph(3′)-Ia, aph(4)-Ia, aph(6)-Id), quinolone resistance genes (qnrS1, qnrS2), tetracycline resistance genes (oqxA10, oqxB17), fosfomycin resistance gene (fosA3), and chloramphenicol resistance genes (cmlA1, cmlA5).
Effects of levodopa on gut bacterial antibiotic resistance in Parkinson's disease rat.
Levodopa treatment influenced the abundance of antibiotic resistance genes in gut bacteria of Parkinson's disease rats, decreasing tetW and vanTG while increasing AAC6-Ib-Suzhou.
Correlations among Antibiotic Resistance Genes, Mobile Genetic Elements and Microbial Communities in Municipal Sewage Treatment Plants Revealed by High-Throughput Sequencing.
The study identifies various tetracycline resistance genes (tetC, tetE, tetG, tetM, tetO, tetQ, tetW, tetX), sulfonamide resistance gene (sulI), aminoglycoside resistance genes (ant(2')-Ia, ant(3')-Ia, aph(6')-Id, aph(33')-Ib, aac(6')-Ib), beta-lactam resistance genes (blaGES, blaVEB), chloramphenicol resistance gene (catB3), MLS resistance genes (ereA, ermB), and multidrug resistance genes (acrB, mexB, mexF) in municipal sewage treatment plants, highlighting their association with mobile genetic elements and microbial communities.
A multicentre study reveals dysbiosis in the microbial co-infection and antimicrobial resistance gene profile in the nasopharynx of COVID-19 patients.
The study identified a variety of antimicrobial resistance genes in the nasopharynx of COVID-19 patients, including beta-lactamases, macrolide-lincosamide-streptogramin resistance genes, tetracycline resistance genes, and others. These genes were found to be prevalent in both symptomatic and asymptomatic patients, highlighting the importance of monitoring antimicrobial resistance in the context of the pandemic.
Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.
The study identified various AMR genes in sepsis-causing bacteria, including beta-lactamases, aminoglycoside-modifying enzymes, tetracycline resistance genes, and others, highlighting the complexity of AMR in these pathogens.
Efficacy of Zidovudine-Amikacin Combination Therapy In Vitro and in a Rat Tissue Cage Infection Model against Amikacin-Resistant, Multidrug-Resistant Enterobacteriales.
The study identified the aac(6')-Ib, armA, rmtB, and rmtC genes as responsible for amikacin resistance in 53 amikacin-resistant MDR Enterobacteriales isolates. The zidovudine-amikacin combination showed significant synergistic effects against these isolates in vitro and in vivo.
Antibiotics and Bacterial Resistance-A Short Story of an Endless Arms Race.
The paper discusses the mechanisms of antibiotic actions and bacterial resistance strategies, highlighting the challenges posed by multidrug-resistant microbes and the need for new antimicrobial agents.
Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation.
The study identified multiple AMR genes and efflux pump systems in P. aeruginosa persister isolates, highlighting their multidrug-resistant phenotype and biofilm-forming capabilities.
Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation.
The study identified multiple AMR genes and efflux pump systems in P. aeruginosa persister isolates, highlighting their multidrug-resistant phenotype and biofilm-forming capabilities.
Brevundimonas brasiliensis sp. nov.: a New Multidrug-Resistant Species Isolated from a Patient in Brazil.
The study characterizes Brevundimonas brasiliensis sp. nov., a novel species isolated from a neonatal intensive care unit, and identifies several antimicrobial resistance genes and mutations associated with resistance to β-lactams, aminoglycosides, fluoroquinolones, and colistin.
Brevundimonas brasiliensis sp. nov.: a New Multidrug-Resistant Species Isolated from a Patient in Brazil.
The study characterizes Brevundimonas brasiliensis sp. nov., a novel species isolated from a neonatal intensive care unit, and identifies several antimicrobial resistance genes and mutations associated with resistance to β-lactams, aminoglycosides, fluoroquinolones, and colistin.
Antibiotic-Resistant Desulfovibrio Produces H(2)S from Supplements for Animal Farming.
The study identifies multiple antibiotic resistance genes in Desulfovibrio vulgaris L2, including beta-lactamases, aminoglycoside modifying enzymes, tetracycline resistance genes, and mercury resistance genes, highlighting its potential role in spreading antibiotic resistance in agricultural environments.
Whole-genome sequencing reveals high-risk clones of Pseudomonas aeruginosa in Guangdong, China.
The study identified multiple AMR genes, including aac(6')-IIa, aac(6')-Ib4, aac(6')-Ib7, aac(6')-Ib9, aac(6')-Ib10, aac(3)-IId, aadA, aadA2, aadA3, aadA7, aadA13, bla OXA-50-Like, bla OXA-1-Like, bla OXA-10-Like, bla OXA-21-Like, bla VIM-2, bla IMP-9, bla IMP-45, bla KPC-2, bla CTX-M-13, bla CARB-1, bla CARB-3, qnrVC1, qnrVC6, bla PDC-3, and bla PDC-5, in Pseudomonas aeruginosa isolates from Guangdong, China, highlighting the high prevalence of multidrug-resistant and carbapenem-resistant strains.
Investigating Possible Interspecies Communication of Plasmids Associated with Transfer of Third-Generation Cephalosporin, Quinolone, and Colistin Resistance Between Simultaneously Isolated Escherichia Coli and Klebsiella Pneumoniae.
The study identified multiple AMR genes in E. coli and K. pneumoniae isolates, including bla CTX-M-14, qnrS1, mcr-1.1, and others, highlighting the role of plasmids in the transfer of resistance genes between species.
Overcoming biological barriers to improve treatment of a Staphylococcus aureus wound infection.
The study identifies aminoglycoside-modifying enzymes aac(6')-Ib, aph(3')-IIIa, and ant(4')-la as responsible for gentamicin resistance in Staphylococcus aureus and Enterococcus faecalis. Palmitoleic acid enhances gentamicin efficacy against resistant strains by increasing uptake.
Molecular evaluation of aminoglycosides resistance and biofilm formation in Klebsiella pneumoniae clinical isolates: A cross-sectional study.
The study identified several aminoglycoside resistance genes, including ant(2'')-Ia, aac(3')-IIa, armA, aac(6')-Ib, and aph(3')-Ia, in Klebsiella pneumoniae isolates. These genes were associated with resistance to tobramycin and amikacin. Additionally, biofilm formation was significantly linked to antibiotic resistance.
Epidemiological investigation and drug resistance characteristics of Riemerella anatipestifer strains from large-scale duck farms in Shandong Province, China from March 2020 to March 2022.
The study identified multiple drug resistance genes in R. anatipestifer strains, including high prevalence of tetracycline resistance gene tet X (95.9%), macrolide resistance gene ermF (77%), and others. The strains exhibited multidrug resistance, with the highest resistance to gentamicin (77%) and enrofloxacin (73%).
Genome-Based Retrospective Analysis of a Providencia stuartii Outbreak in Rome, Italy: Broad Spectrum IncC Plasmids Spread the NDM Carbapenemase within the Hospital.
The study identifies the presence of bla NDM-1 and rmtC genes on an IncC plasmid in Providencia stuartii, contributing to extensive drug resistance. Additional resistance genes such as aac(6')-Ib3, sul1, bla CMY-6, tet(B), catA3, and aac(2')-Ia were also found.
Genomic epidemiology of nosocomial carbapenemase-producing Citrobacter freundii in sewerage systems in the Helsinki metropolitan area, Finland.
The study identified bla KPC-2 and bla VIM-1 carbapenemase genes, along with various other AMR genes such as aac(6′)-If, aph(6)-Id, aac(3)-IIa, aadA1, dfrA1, sul2, sat2, qnrB, cmlA5, bla OXA-9, bla CMY-79, bla CMY-116, bla TEM-1A, bla CMY-117, bla OXA-10, bla CFE, bla CMY-100, aac(6′)-Ib, aadA2, sul1, qnrS1, qnrB9, mph(E), msr(E), aac(6′)-Iic, and dfrA16 in carbapenemase-producing Citrobacter freundii isolates from hospital environments and municipal wastewater in Finland.
Whole-Genome Sequencing Revealed the Fusion Plasmids Capable of Transmission and Acquisition of Both Antimicrobial Resistance and Hypervirulence Determinants in Multidrug-Resistant Klebsiella pneumoniae Isolates.
The study identified multiple antimicrobial resistance genes and hypervirulence determinants in multidrug-resistant Klebsiella pneumoniae isolates, highlighting the role of fusion plasmids in the transmission of these traits.
Antimicrobial resistance in bacteria isolated from peridomestic Rattus species: A scoping literature review.
This scoping review identifies various antimicrobial resistance (AMR) genes in bacteria isolated from peridomestic Rattus species, including beta-lactamases (bla TEM, bla CTX-M, bla SHV, bla VIM, bla IMP, bla NDM-1), aminoglycoside resistance genes (strA, strB, aadA, aphA), sulfonamide resistance genes (sul1, sul2, sul3), tetracycline resistance genes (tetA, tetB, tet34), trimethoprim resistance genes (dfrA1, dfrA17, dfr14), quinolone resistance genes (qnrB1), and others.
Investigation of multidrug-resistant plasmids from carbapenemase-producing Klebsiella pneumoniae clinical isolates from Pakistan.
The study identified 34 antimicrobial resistance genes (ARGs) in multidrug-resistant (MDR) plasmids from carbapenemase-producing Klebsiella pneumoniae clinical isolates in Pakistan, including bla NDM-1, bla OXA-48, and various beta-lactamases, aminoglycoside resistance genes, and others.
Involvement of Acquired Tobramycin Resistance in the Shift to the Viable but Non-Culturable State in Pseudomonas aeruginosa.
The study identifies the role of acquired tobramycin resistance mechanisms, including the ant(2")-Ia, aph(3')-IIb, aac(6')-Ib3 genes, and the mexY gene encoding the MexXY-OprM efflux pump, in the transition of Pseudomonas aeruginosa to the viable but non-culturable (VBNC) state.
Molecular characterization of multidrug resistant Acinetobacter baumannii clinical isolates from Alexandria, Egypt.
The study identified various AMR genes in multidrug-resistant Acinetobacter baumannii isolates from Alexandria, Egypt, including bla OXA-51-like variants, bla OXA-23, bla NDM-1, bla PER-7, bla GES-like, and others, highlighting the widespread resistance to beta-lactams, aminoglycosides, tetracyclines, and other antibiotics.
Genomic and functional portrait of multidrug-resistant, hydrogen sulfide (H(2)S)-producing variants of Escherichia coli.
The study identified multidrug-resistant, hydrogen sulfide-producing variants of Escherichia coli from Bangladesh, highlighting the presence of various AMR genes such as bla TEM1B, bla CTX-M-55, bla CTX-M-65, bla CTX-M-123, aadA1, aadA2, aph (3')-Ia, aph (3'')-Ib, aph (6)-Id, tet(A), tet(M), sul3, sul2, dfrA12, mph(A), floR, cmlA1, qacL, and qnrS1.
Prevalence and molecular characterization of cefotaxime-resistant Salmonella strains recovered from retail meat samples in Shenzhen, China, during 2014-2017.
The study identified several beta-lactamase genes, including bla CTX-M-14, bla CTX-M-55, bla CTX-M-65, bla CTX-M-130, bla CTX-M-27, and bla CMY-2, as well as other resistance genes such as qnrS1, qnrB6, mph(A), oqxAB, mcr-1.1, tet(A), tet(B), sul1, sul2, sul3, aac(6')-Ib, aph(3")-Ib, floR, drfA14, drfA1, and Inu(F), which contribute to cefotaxime resistance in Salmonella strains isolated from retail meat samples in Shenzhen, China.
Phenotypic and Genotypic Analysis of Bacterial Pathogens Recovered from Patients Diagnosed with Fever of Unknown Origin in Egypt.
The study identified bla OXA−48, bla VIM, bla IMP, bla TEM, bla CTX-M, aac(6′)-Ib, and bla SHV as prevalent resistance genes in multidrug-resistant (MDR) bacterial isolates from patients with fever of unknown origin in Egypt.
Outbreak of OXA-232-producing carbapenem-resistant Klebsiella pneumoniae ST15 in a Chinese teaching hospital: a molecular epidemiological study.
The study identified the presence of multiple AMR genes, including blaOXA-232, blaCTX-M-15, blaSHV-28, fosA, oqxA, oqxB, tet(E), AAC(6')-Ib, APH(3'')-Ib, APH(6)-Id, TEM-1, sul2, QnrB17, QnrB1, dfrA14, arr-2, AAC(6')-Ib9, and rmtF, in OXA-232-producing CRKP isolates from a hospital outbreak in China.
Genomic characterization of colistin-resistant Klebsiella pneumoniae isolated from intensive care unit patients in Egypt.
The study identifies mcr-1.1 as a plasmid-mediated colistin resistance gene and characterizes several chromosomal mutations in mgrB, arnT, pmrA, pmrB, pmrC, phoQ, and arnB that contribute to colistin resistance in K. pneumoniae isolates from Egypt.
Genomic characterization of colistin-resistant Klebsiella pneumoniae isolated from intensive care unit patients in Egypt.
The study identifies mcr-1.1 as a plasmid-mediated colistin resistance gene and characterizes several chromosomal mutations in mgrB, arnT, pmrA, pmrB, pmrC, phoQ, and arnB that contribute to colistin resistance in K. pneumoniae isolates from Egypt.
Isolation and Characterization of the Acadevirus Members BigMira and MidiMira Infecting a Highly Pathogenic Proteus mirabilis Strain.
The study identifies multiple antibiotic resistance genes in the highly pathogenic Proteus mirabilis strain MCS, highlighting its multidrug-resistant profile. Key genes include tetA, aac(6')-Iq, aac(6')-Ib', aadA, dfrA1, blaOXA-9, blaCTX-M-2, vat, catA2, sul1, qacEdeltal, tetQ, blaTEM-135, aadA2, aph(3')-Ia, aph(6)-Id, aph(3'')-lb, and sulI.
First Detection and Molecular Characterization of Pseudomonas aeruginosa bla(NDM-1) ST308 in Greece.
The study reports the first detection of blaNDM-1-positive Pseudomonas aeruginosa ST308 in Greece, highlighting the presence of multiple resistance genes including blaNDM-1, blaPAO, blaOXA-10, blaOXA-488, and others, indicating multidrug resistance.
The Resistance and Virulence Characteristics of Salmonella Enteritidis Strain Isolated from Patients with Food Poisoning Based on the Whole-Genome Sequencing and Quantitative Proteomic Analysis.
The study identified multiple antimicrobial resistance genes in the multidrug-resistant Salmonella Enteritidis strain 27A, including beta-lactamase blaTEM-194, aminoglycoside resistance genes aac(6)-Ib, aac(6)-If, aph(3”)-Ib, and aph(6)-Id, tetracycline resistance genes tetA, tetR, and tet34, and efflux pump genes acrA, acrB, tolC, oprM, mexE, mexF, macB, mdtG, mdtH, mdtL, mdtM, mdtK, rosA, emrA, emrR, ykkc, and vanRA.
Prioritization of Critical Factors for Surveillance of the Dissemination of Antibiotic Resistance in Pseudomonas aeruginosa: A Systematic Review.
The study identifies 25 critical mobile antibiotic resistance genes (ARGs) in Pseudomonas aeruginosa, including genes such as sul1, qacEΔ1, aac(6′)-Ib, bla VIM-1, and others, which are associated with various antibiotic classes and are linked to mobile genetic elements (MGEs).
Decoding the genetic structure of conjugative plasmids in international clones of Klebsiella pneumoniae: A deep dive into blaKPC, blaNDM, blaOXA-48, and blaGES genes.
The study characterizes the genetic structure of plasmids harboring major carbapenemase genes (blaKPC, blaNDM, blaOXA-48, and blaGES) in Klebsiella pneumoniae, identifying the most prevalent allele types and their co-occurrence with other resistance genes.
First Report of aac(6′)-Ib and aac(6′)-Ib-cr Variant Genes Associated with Mutations in gyrA Encoded Fluoroquinolone Resistance in Avian Campylobacter coli Strains Collected in Tunisia.
The study reports the first detection of aac(6′)-Ib and aac(6′)-Ib-cr variant genes in Campylobacter coli strains from Tunisia, along with the Thr-86-Ile mutation in gyrA associated with fluoroquinolone resistance.
Genomic characterization of tigecycline-resistant Escherichia coli and Klebsiella pneumoniae isolates from hospital sewage.
The study identifies tet(X4) and tmexCD1-toprJ1 as key genes contributing to tigecycline resistance in E. coli and K. pneumoniae isolates from hospital sewage, highlighting the role of plasmid-mediated resistance and efflux pump overexpression.
Occurrence and temporal distribution of extended-spectrum β-lactamase-producing Escherichia coli in clams from the Central Adriatic, Italy.
The study identified several β-lactamase genes, including bla CTX-M-1, bla CTX-M-14, bla CTX-M-15, bla CTX-M-27, bla CTX-M-55, bla SHV12, bla CMY-2, bla TEM-1B, bla TEM-106, and bla TEM-126, which confer resistance to various β-lactam antibiotics. Other resistance genes such as aac(6′)-Ib-cr, qnrS1, tet(A), tet(B), tet(M), aadA5, aadA2b, sul1, sul2, sul3, dfrA17, dfrA5, dfrA14, dfrA12, mph(A), cmlA1, catA2, aac(3)-IIa, aac(3)-IId, and lnu(F) were also characterized, providing insights into the multidrug resistance profiles of ESBL-producing E. coli isolates from clams in the Central Adriatic.
The secrets of environmental Pseudomonas aeruginosa in slaughterhouses: Antibiogram profile, virulence, and antibiotic resistance genes.
The study identified multiple antibiotic resistance genes in Pseudomonas aeruginosa isolates from slaughterhouses, including blaCTX-M, blaAmpC, blaSHV, blaNDM, IMP-1, aac(6')-Ib, ant(4')IIb, qnrB, tetA, mexY, TEM, and rmtC. These genes confer resistance to various antibiotics such as beta-lactams, aminoglycosides, fluoroquinolones, and tetracyclines.
Predominance of Multidrug-Resistant Gram-Negative Bacteria Isolated from Supermarket Retail Seafood in Japan.
The study identified multiple AMR genes, including bla TEM-1, bla CTX-M-like, bla CTX-M-65, aac(6')-Ib, and mcr, in Gram-negative bacteria isolated from retail seafood in Japan, highlighting the prevalence of multidrug-resistant strains.
Resistance to aminoglycoside and quinolone drugs among Klebsiella pneumoniae clinical isolates from northern Jordan.
The study identified several aminoglycoside-modifying enzymes and plasmid-mediated quinolone resistance genes in K. pneumoniae isolates from northern Jordan, including aac(6')-Ib, aac(3')-II, ant(3")-I, aph(3')-VI, armA, rmtB, qnrS, qnrB, oqxAB, and aac(6')-Ib-cr. These genes were significantly associated with non-susceptibility to aminoglycosides, quinolones, and beta-lactams.
Dynamics and quantitative contribution of the aminoglycoside 6'-N-acetyltransferase type Ib [AAC(6')-Ib] to amikacin resistance.
The study characterizes the aminoglycoside 6'-N-acetyltransferase type Ib (AAC(6')-Ib) and its role in amikacin resistance, showing that resistance increases linearly with AAC(6')-Ib concentration until a plateau is reached due to protein aggregation.
Genomic Insights into the Adaptation and Antibiotic Resistance Mechanisms of Williamsia chitiniclastica
The study identifies several AMR genes in Wohlfahrtiimonas chitiniclastica, including macA, macB, tehB, tet(H), tet(B), ant(2″)-Ia, aac(6′)-Ib, ant(3″)-Ib, bla VEB-1, bla OXA-1, aph(3′)-Ib, sul2, strA, and dfrA1, which confer resistance to various antibiotics such as macrolides, tetracycline, aminoglycosides, beta-lactams, sulfonamides, and trimethoprim.
Metagenomic identification of pathogens and antimicrobial-resistant genes in bacterial positive blood cultures by nanopore sequencing.
The study identified various antimicrobial resistance (AMR) genes in bacterial positive blood cultures using nanopore sequencing, demonstrating the effectiveness of this method in detecting resistance mechanisms and pathogens quickly.
Short-duration selective decontamination of the digestive tract infection control does not contribute to increased antimicrobial resistance burden in a pilot cluster randomised trial (the ARCTIC Study).
The study found no significant increase in clinically relevant antimicrobial resistance gene burden in critically ill children treated with SDD-enhanced infection control compared to standard care.
Predicting Salmonella MIC and Deciphering Genomic Determinants of Antibiotic Resistance and Susceptibility.
The study presents a novel 'Genome Feature Extractor Pipeline' that uses machine learning and deep learning to predict Salmonella MIC values based on 20-mer counts from WGS data. The pipeline identifies key genomic features associated with antibiotic resistance, including known resistance genes such as beta-lactamases, aminoglycoside modifying enzymes, quinolone resistance genes, tetracycline efflux pumps, and sulfonamide resistance genes.
Plasmid content of carbapenem resistant Acinetobacter baumannii isolates belonging to five International Clones collected from hospitals of Alexandria, Egypt.
The study characterizes various AMR genes in carbapenem-resistant Acinetobacter baumannii isolates, including blaOXA-23, blaPER-7, blaGES-11, blaGES-35, aph(3')-VI, aac(6')-Ib, sul1, sul2, mph(E), msr(E), armA, strA, strB, cmlA5, arr-2, ant(3'')-II, aadA1-pm, tet(B), tet(39), qacEΔ1, and dfrA7.
Stenotrophomonas maltophilia complex: insights into evolutionary relationships, global distribution and pathogenicity.
The study identified 46 antimicrobial resistance genes (ARGs) in the Stenotrophomonas maltophilia complex (Smc), including aac(6')-Ib, ant(3'')-I, smeABC, smeRS, sul1, and sul2. These genes confer resistance to various antibiotics such as amikacin, gentamicin, ceftazidime, and trimethoprim/sulfamethoxazole. Notably, all 14 strains of S. geniculata were resistant to ceftazidime, highlighting the importance of monitoring resistance patterns in Smc species.
Genomic investigation unveils high-risk ESBL producing Enterobacteriaceae within a rural environmental water body.
The study identifies several AMR genes and mutations in ESBL-producing Enterobacteriaceae isolated from a rural environmental water body in India, highlighting the presence of multidrug-resistant strains with genes such as bla VEB-6, bla SHV-12, bla NDM-1, bla CTX-M, and mcr-9, along with mutations in ompK 36 and gyrA.
Genomic Characterization of a Plasmid-Free and Highly Drug-Resistant Salmonella enterica Serovar Indiana Isolate in China.
The study identifies 54 AMR genes and three AMR gene cassettes in the plasmid-free, highly drug-resistant Salmonella enterica serovar Indiana isolate S1467, contributing to resistance against multiple antimicrobial classes.
Dynamics and quantitative contribution of the aminoglycoside 6'-N-acetyltransferase type Ib to amikacin resistance.
The study characterizes the aminoglycoside 6'-N-acetyltransferase type Ib (AAC(6')-Ib) and demonstrates its role in amikacin resistance, showing a linear relationship between enzyme copy number and resistance levels up to a plateau.
In-depth characterization of multidrug-resistant NDM-1 and KPC-3 co-producing Klebsiella pneumoniae bloodstream isolates from Italian hospital patients.
The study characterized multidrug-resistant NDM-1 and KPC-3 co-producing Klebsiella pneumoniae bloodstream isolates, identifying several AMR genes and mutations associated with resistance to various antibiotics.
Gut diversity and the resistome as biomarkers of febrile neutropenia outcome in paediatric oncology patients undergoing hematopoietic stem cell transplantation.
The study identifies several antibiotic-resistance genes associated with febrile neutropenia in pediatric oncology patients undergoing hematopoietic stem cell transplantation, including msr(C), dfrG, erm(T), VanHAX, aac(6')-Ib, aph(3')-III, ant(6)-Ia, and aac(6')-Ii.
Emergence of carbapenem resistant gram-negative pathogens with high rate of colistin resistance in Egypt: A cross sectional study to assess resistance trends during the COVID-19 pandemic.
The study identified high prevalence of carbapenem resistance in Gram-negative pathogens in Egypt, with bla NDM and bla OXA-48-like being the most prevalent carbapenemase genes. Plasmid-mediated quinolone resistance genes qnrS and qnrB were also detected. Additionally, several aminoglycoside resistance genes and integron-associated gene cassettes were characterized.
Emergence of carbapenem resistant gram-negative pathogens with high rate of colistin resistance in Egypt: A cross sectional study to assess resistance trends during the COVID-19 pandemic.
The study identified high prevalence of carbapenem resistance in Gram-negative pathogens in Egypt, with bla NDM and bla OXA-48-like being the most prevalent carbapenemase genes. Plasmid-mediated quinolone resistance genes qnrS and qnrB were also detected. Additionally, several aminoglycoside resistance genes and integron-associated gene cassettes were characterized.
Comparison of genotypic and phenotypic antimicrobial resistance profiles of Salmonella enterica isolates from poultry diagnostic specimens.
The study identified 31 AMR genes in 97 Salmonella enterica isolates from poultry, including aac(3)-IId, aac(3)-IVa, aac(3)-VIa, aac(6′)-Ib4, ant(2′′)-Ia, grdA, aph(3′)-Ia, aph(3′)-IIa, aadA1, aadA2, aadA7, aadA13, aph(3′)-Ib, aph(6)-Ic, aph(6)-Id, aph(4)-Ia, blaCMY-2, blaCTX-M-1, blaHER-3, blaTEM-1, floR, tetA, tetB, tetC, dfrA12, sul1, sul2, fosA7, qnrB19, ble, and mcr-9.
Klebsiella pneumoniae sequence type 147: a high-risk clone increasingly associated with plasmids carrying both resistance and virulence elements.
The study identified various AMR genes and mutations in Klebsiella pneumoniae ST147 isolates, including bla NDM-5, bla NDM-1, bla OXA-181, bla OXA-232, bla OXA-48, aadA1, aph(3')-VI, bla CTX-M-15, bla TEM-1B/C, bla OXA-9, truncated catA1, qnrS1, sul1, dfrA5, mph(A), erm(B), aac(6')-Ib, aac(6')-Ib3, sul2, aph(3')-Ia, rmtB, fosA, oqxAB, bla SHV-11/67, arr-3, and catB3.
Klebsiella pneumoniae sequence type 147: a high-risk clone increasingly associated with plasmids carrying both resistance and virulence elements.
The study identified various AMR genes and mutations in Klebsiella pneumoniae ST147 isolates, including bla NDM-5, bla NDM-1, bla OXA-181, bla OXA-232, bla OXA-48, aadA1, aph(3')-VI, bla CTX-M-15, bla TEM-1B/C, bla OXA-9, truncated catA1, qnrS1, sul1, dfrA5, mph(A), erm(B), aac(6')-Ib, aac(6')-Ib3, sul2, aph(3')-Ia, rmtB, fosA, oqxAB, bla SHV-11/67, arr-3, and catB3.
Longitudinal analysis within one hospital in sub-Saharan Africa over 20Â years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations.
The study identifies the widespread presence of blaCTX-M-15, catA1, catA2, aac(6')-Ib, aac(3)-II, and aadB genes in Klebsiella pneumoniae isolates, contributing to resistance against beta-lactams, chloramphenicol, and aminoglycosides.
Defining the phylogenetics and resistome of the major Clostridioides difficile ribotypes circulating in Australia.
The study identifies AMR genes such as ermB, tetM, aac(6')-Ib, sat4A, ant6-Ia, and aph3-III in Clostridioides difficile strains, particularly in RT014/020. Mutations in gyrA and gyrB contribute to fluoroquinolone resistance. AMR is uncommon, with limited evidence of clonal transmission.
Multidrug-Resistant Bacteria in Surgical Intensive Care Units: Antibiotic Susceptibility and β-Lactamase Characterization.
The study identified OXA-48 carbapenemase in 82.9% of K. pneumoniae isolates and NDM in 7.3%. bla CTX-M-15, bla SHV, and bla OXA-1 were also detected. Additionally, aac(6")-Ib, dfrA14, oqxA, and oqxB were found to confer resistance to aminoglycosides, trimethoprim, and fluoroquinolones.
Phenotypic and genotypic evaluation of aminoglycoside resistance in Escherichia coli isolated from patients with blood stream infections in Tehran, Iran.
The study identifies aac(3)-IVa, aac(6)-Ib, and aac(3)-IIa as the most prevalent aminoglycoside resistance genes in E. coli isolates from bloodstream infections in Tehran, Iran.
Variation in the response to antibiotics and life-history across the major Pseudomonas aeruginosa clone type (mPact) panel.
The study identifies variations in antibiotic resistance and life-history traits among the mPact panel of Pseudomonas aeruginosa strains, highlighting the presence of specific AMR genes and mutations contributing to resistance against various antibiotics.
A panel of genotypically and phenotypically diverse clinical Acinetobacter baumannii strains for novel antibiotic development.
The study identifies various AMR genes and mutations in a diverse panel of Acinetobacter baumannii strains, including bla OXA-23, bla OXA-24, bla OXA-58, bla NDM-1, and mutations in gyrA and parC associated with fluoroquinolone resistance.
Four novel Acinetobacter lwoffii strains isolated from the milk of cows in China with subclinical mastitis.
Four Acinetobacter lwoffii strains were isolated from the milk of cows with subclinical mastitis in China. These strains exhibited multidrug resistance and carried 17 resistance genes, including beta-lactamase, aminoglycoside-modifying, fluoroquinolone, tetracycline, sulfonamide, and chloramphenicol resistance genes.
Genomic and phenotypic inconsistencies in Pseudomonas aeruginosa resistome among intensive care patients.
The study identified several AMR genes and mutations in P. aeruginosa isolates from ICU patients, highlighting discrepancies between phenotypic and genotypic resistance profiles. Key findings include the detection of blaGES-5, aac(6')-Ib, aphA15, and mutations in gyrA and parC associated with fluoroquinolone resistance.
Prevalence and mechanisms of aminoglycoside resistance among drug-resistant Pseudomonas aeruginosa clinical isolates in Iran.
The study identified aac(6')-Ib, ant(2'')-Ia, and aph(3')-VI as the primary aminoglycoside resistance genes in P. aeruginosa isolates from Ardabil hospitals, with aac(6')-Ib being the most prevalent.
Pathogenomics analysis of high-risk clone ST147 multidrug-resistant Klebsiella pneumoniae isolated from a patient in Egypt.
The study identifies multiple AMR genes in the MDR-KP isolate WSF99, including various beta-lactamases, carbapenemase, aminoglycoside modifying enzymes, fluoroquinolone resistance genes, and others, highlighting the complex resistance profile of this high-risk clone.
Emergence of Carbapenem-resistant Clinical Isolates of Providencia Species.
The study identifies blaIMP-70, blaIMP-1, and blaIMP-11 as carbapenem resistance genes in Providencia species isolates, along with aac(6')-Ib4 and aac(6')-Iae for aminoglycoside resistance. Mutations in gyrA and parC contribute to quinolone resistance.
Phenotypic and genotypic assessment of fluoroquinolones and aminoglycosides resistances in Pseudomonas aeruginosa collected from Minia hospitals, Egypt during COVID-19 pandemic.
The study identified qnrS, qnrA, qnrD, aac(6')-Ib, rmtB, and mexA as the main genes contributing to fluoroquinolone and aminoglycoside resistance in P. aeruginosa isolates during the COVID-19 pandemic.
Antimicrobial Resistance in Coagulase-Negative Staphylococci: Resistome, Mobiloome, and Relatedness
The study identifies multiple AMR genes and mutations in CoNS isolates from various hosts, highlighting the spread of multidrug resistance and the role of mobile genetic elements in the dissemination of resistance traits.
Genetic landscape of ESBL producing international clone ST410 of Escherichia coli from pediatric infections in Shenzhen, China.
The study identifies multiple ESBL genes, including bla CTX-M, bla TEM, and bla SHV, along with other resistance genes such as bla OXA-1, bla KPC-2, bla NDM-1, and others, contributing to multidrug resistance in E. coli ST410 isolates from pediatric infections in Shenzhen, China.
Investigation of in vitro susceptibility and resistance mechanisms to amikacin among diverse carbapenemase-producing Enterobacteriaceae.
The study identified the aminoglycoside resistance genes rmtF and aac(6')-Ib in carbapenemase-producing Enterobacteriaceae (CPE) strains, particularly in those carrying the bla OXA−48 gene. These genes were located on plasmids and contributed to amikacin resistance.
The gut microbiota of wild birds undergoing rehabilitation as a reservoir of multidrug-resistant enterococci in a metropolitan area in Brazil.
The study identified multiple antimicrobial resistance genes in enterococci isolated from wild birds, including genes conferring resistance to aminoglycosides, erythromycin, tetracycline, and streptogramins.
Whole-genome sequencing of Klebsiella pneumoniae MDR circulating in a pediatric hospital setting: a comprehensive genome analysis of isolates from Guayaquil, Ecuador.
The study identified several AMR genes and mutations in K. pneumoniae isolates from Ecuador, including bla KPC-3, bla OXA-9, aadA1, aac(6')-Ib-AKT, and mutations in ompK35, ompK36, ompK37, gyrA, parC, and acrR, contributing to resistance against beta-lactams, aminoglycosides, fluoroquinolones, and other antibiotics.
Antimicrobial Resistance in Wastewater Samples from Kumasi, Ghana: A Genomic and Metagenomic Analysis
The study identified several AMR genes and mutations in P. aeruginosa and K. pneumoniae isolates from wastewater samples in Kumasi, Ghana, highlighting the presence of multidrug-resistant strains carrying genes such as blaCTX-M-15, blaOXA-488, and qnrVC1, along with mutations in gyrA and parC contributing to fluoroquinolone resistance.
Microplastic diversity increases the abundance of antibiotic resistance genes in soil.
The study shows that increasing microplastic diversity in soil leads to a significant increase in the abundance of antibiotic resistance genes (ARGs), including those conferring resistance to aminoglycosides, macrolide-lincosamide-streptogramin, florfenicol, and tetracycline.
Identification and characterisation of colistin-resistant Acinetobacter colistiniresistens co-producing IMP-1 and OXA-58 carbapenemases.
The study identifies and characterizes a colistin-resistant Acinetobacter colistiniresistens isolate co-producing IMP-1 and OXA-58 carbapenemases. The isolate exhibits resistance to multiple antibiotics, including carbapenems, cephalosporins, and polymyxins, and harbors several resistance genes such as blaIMP-1, blaOXA-58, and eptA-like, which contribute to its multidrug-resistant phenotype.
Genomic surveillance detects interregional spread of New Delhi metallo-beta-lactamase-1-producing Providencia stuartii in hospitals, Romania, December 2021 to September 2023.
The study identifies the spread of NDM-1-producing Providencia stuartii in Romania, highlighting the presence of multiple resistance genes including bla NDM-1, bla OXA-10, bla CMY-4, bla CMY-16, bla CMY-194, qnrD2, armA, aph(3')-VI, aac(6')-Ib3, rmtC, dfrA14, dfrA12, sul1, and sul2.
First Detection of High-Level Aminoglycoside-Resistant Klebsiella pneumoniae and Enterobacter cloacae Isolates Due to 16S rRNA Methyltransferases with and Without bla(NDM) in Uruguay.
The study identifies the first detection of high-level aminoglycoside-resistant Klebsiella pneumoniae and Enterobacter cloacae isolates in Uruguay, carrying 16S rRNA methyltransferases (rmtB, rmtC, rmtD) along with carbapenemase genes (bla NDM-5, bla NDM-1).
Data-Driven Approaches in Antimicrobial Resistance: Machine Learning Solutions.
This study uses unsupervised machine learning to identify patterns in AMR genes, linking gene length and resistance class to resistance mechanisms. Key AMR genes identified include sul1, sul2, cat, blaTEM, vanA, aac(6')-Ib, aph(3')-IIIa, tet(M), and tet(O).
Global genomic epidemiology of bla (GES-5) carbapenemase-associated integrons.
The study characterizes the global genomic epidemiology of blaGES-5, a carbapenemase-associated integron, highlighting its prevalence in Pseudomonas aeruginosa and its association with various gene cassettes.
The association between the genetic structures of commonly incompatible plasmids in Gram-negative bacteria, their distribution and the resistance genes.
The study characterizes various resistance genes carried by incompatible plasmids in Gram-negative bacteria, highlighting their role in the spread of antibiotic resistance. Key genes include beta-lactamases like bla VIM-1, bla SHV-12, bla TEM-1B, and bla CTX-M-15, as well as sulfonamide resistance genes sul1 and sul2, tetracycline resistance gene tetA, and polymyxin resistance gene mcr-1.
Phenotypic and genotypic characterization of clinical carbapenem-resistant Acinetobacter species harboring the metallo-beta-lactamases IMP-8 or NDM-1 in China.
The study characterized the phenotypic and genotypic features of one IMP-8-producing and four NDM-1-producing plasmids in Acinetobacter spp. strains isolated in 2010, highlighting the presence of various resistance genes including blaIMP-8, blaNDM-1, aac(6')-Ib, aac(3)-IId, msr(E), mph(E), sul1, sul2, tet(39), and aph(3')-VI.
Tracking Multidrug Resistance in Gram-Negative Bacteria in Alexandria, Egypt (2020-2023): An Integrated Analysis of Patient Data and Diagnostic Tools.
The study identified bla NDM-5 as the most prevalent carbapenemase gene in E. coli isolates from Alexandria, Egypt, along with other resistance genes such as bla OXA-48, bla VIM, bla CTX-M-15, aadA2, aac(6')-Ib, qnrS1, dfrA12, sul1, and sul2.
Phenotypic and Genomic Characterization of ESBL- and AmpC-β-Lactamase-Producing Enterobacterales Isolates from Imported Healthy Reptiles.
The study identified multiple ESBL and AmpC β-lactamase genes, including bla CTX-M-15, bla CTX-M-55, bla CTX-M-3, bla CTX-M-27, bla CTX-M-65, bla SHV-12, bla SHV-42, bla DHA-1, bla CMY-2, bla CMY-3, bla CMY-46, bla CMY-101, bla ACT-16, bla CMH-like, and bla MIR-9, along with other AMR genes such as mcr-1, qnrS1, aac(6')-Ib-cr5, and various tetracycline, aminoglycoside, sulfonamide, chloramphenicol, macrolide, lincosamide, and rifampicin resistance genes in Enterobacterales isolates from imported healthy reptiles.
Emerging carbapenem-resistant Klebsiella pneumoniae in a tertiary care hospital in Lima, Peru.
The study identifies blaNDM-1, blaKPC-2, and blaIMP-74 as the primary carbapenem resistance genes in CRKP isolates from Lima, Peru. Additionally, aac(6')-Ib and sul1 were found to confer resistance to aminoglycosides and sulfonamides, respectively.
Antibiotic Resistance in Mammalian Wild Game: A Meta-Analysis
The study presents a comprehensive meta-analysis of antibiotic resistance in bacteria isolated from mammalian wild game, highlighting the prevalence of various AMR genes and mutations across different bacterial species.
Evidence of dissemination of a clc-type integrative and conjugative element to Stenotrophomonas maltophilia, mediating acquisition of sul1 and other resistance determinants.
The study reports the isolation of a Stenotrophomonas maltophilia strain carrying a clc-type integrative and conjugative element (ICE) that mediates the acquisition of multiple resistance determinants, including sul1, blaVIM-1, aac(6')-Ib, aac(6')-31, qacE∆1, cld, and merEDAPTR.
Genomic analysis of Enterobacter cloacae complex from Southern Thailand reveals insights into multidrug resistance genotypes and genetic diversity.
The study identified multiple antimicrobial resistance genes in Enterobacter cloacae complex isolates from Southern Thailand, including beta-lactamases, aminoglycoside modifying enzymes, tetracycline resistance genes, and efflux pumps. Notably, the mcr-9 gene was found to confer colistin resistance.
Acinetobacter baumannii infection in critically ill patients with COVID-19 from Tehran, Iran: the prevalence, antimicrobial resistance patterns and molecular characteristics of isolates.
The study identified multiple antimicrobial resistance genes in Acinetobacter baumannii isolates from COVID-19 patients, including aac(6')-Ib, aac(3)-Ia, ant(2")-Ia, aph(3')-Ia, blaTEM, blaNDM, blaOXA-23-like, and blaOXA-24-like. These genes conferred resistance to various antibiotics, highlighting the challenge of treating multidrug-resistant infections.
Characterization of Klebsiella pneumoniae Isolates Resistant to Cefiderocol from Hospitals and Outpatient Settings in Croatia.
The study characterizes AMR genes in FDC-resistant K. pneumoniae isolates, identifying bla OXA-48, bla KPC, bla NDM, bla CTX-M, aac(6')-Ib, aadA1, aadA2, qnrB, shv, and tem as significant contributors to resistance.
Unveiling the silent threat: A comprehensive review of Riemerella anatipestifer - From pathogenesis to drug resistance.
This review highlights the pathogenesis, virulence factors, and antibiotic resistance genes of Riemerella anatipestifer, emphasizing its significance in poultry farming and the need for further research on its resistance mechanisms.
Genetic compatibility and ecological connectivity drive the dissemination of antibiotic resistance genes.
The study identifies and characterizes various antibiotic resistance genes (ARGs) involved in horizontal gene transfer, highlighting the role of genetic compatibility and ecological connectivity in the dissemination of these genes.
Ceftazidime-avibactam plus aztreonam cocktail for the treatment of VIM-producing Pseudomonas aeruginosa infections: good enough to have another?
The study characterizes several AMR genes and mutations in VIM-producing P. aeruginosa isolates, including aac(6')-Ib3, aac(6')-Il, aac(6')-Ib-Hangzhou, aadA6, qnrVC1, VIM-2, VIM-1, blaCARB-4, and mutations in mexR and mexB. These genes and mutations contribute to resistance against various antibiotics such as aminoglycosides, quinolones, and beta-lactams.
Ceftazidime-avibactam plus aztreonam cocktail for the treatment of VIM-producing Pseudomonas aeruginosa infections: good enough to have another?
The study characterizes several AMR genes and mutations in VIM-producing P. aeruginosa isolates, including aac(6')-Ib3, aac(6')-Il, aac(6')-Ib-Hangzhou, aadA6, qnrVC1, VIM-2, VIM-1, blaCARB-4, and mutations in mexR and mexB. These genes and mutations contribute to resistance against various antibiotics such as aminoglycosides, quinolones, and beta-lactams.
Comprehensive genomic epidemiology and antimicrobial resistance profiles of clinical Klebsiella pneumoniae species complex isolates from a tertiary hospital in Wenzhou, China (2019-2021).
The study identified a variety of antimicrobial resistance genes in clinical Klebsiella pneumoniae species complex isolates, including bla KPC−2, bla CTX−M, bla SHV, aac(6')-Ib, aadA1, aadA2, aph(3')-Ia, oqxAB, qnrB19, qnrS1, tet(A), tet(D), sul1, sul2, sul3, cmlA1, floR, fosA, and fosA3. These genes confer resistance to multiple classes of antibiotics, highlighting the complexity of antimicrobial resistance in these isolates.
First report of multidrug-resistant and pathogenic Plesiomonas shigelloides from endangered crested ibis (Nipponia nippon).
The study reports the first isolation of multidrug-resistant and pathogenic Plesiomonas shigelloides from the endangered crested ibis, highlighting the presence of resistance genes such as blaTEM, aac(6')-Ib3, aac(6')-Ib-cr, mph(A), arr-2, tet(A), qacEΔ1, dfrA1, and sulI.
Wild Birds as Drivers of Salmonella Braenderup and Multidrug Resistant Bacteria in Wetlands of Northern Italy.
The study identifies several AMR genes in bacterial isolates from wild aquatic birds in Northern Italy, including beta-lactamases (blaTEM, blaCMY-1, blaCMY-2, blaNDM, blaKPC), colistin resistance genes (mcr-2, mcr-3, mcr-4), tetracycline resistance genes (tetA, tetB, tetC, tetL, tetM, tetK), macrolide resistance genes (ermB, vatD, vgA, msrC), vancomycin resistance genes (vanC1, vanC2, vanM, vanG), sulfonamide resistance genes (sul1, sul2, sul3), aminoglycoside resistance genes (aac(3), aac(6')-Ib, aph(3')-Ia, armA, rmtB, rmtC, rmtF), and nitrofurantoin resistance genes (nfsA, nfsB).
Mapping Antimicrobial Resistance in Escherichia coli and Klebsiella pneumoniae from Complicated Urinary Tract Infections in Oman: Phenotypic and Genotypic Insights.
The study identified blaDHA-1 as the predominant AmpC gene in E. coli and blaOXA-232 and blaNDM-5 as the primary carbapenemases in K. pneumoniae. Additionally, various other resistance genes such as blaCTX-M-15, blaOXA-1, blaTEM-1B, qnrB4, aac(6')-Ib, and armA were characterized.
A decade of genomic and phenotypic adaptation of carbapenem-resistant Acinetobacter baumannii.
The study identifies various AMR genes and mutations in carbapenem-resistant Acinetobacter baumannii isolates, including blaOXA-23, blaOXA-51-like, and several aminoglycoside resistance genes, contributing to extensive drug resistance.
Antimicrobial Resistance in Nigeria: A Comprehensive Review of Environmental, Food, and Clinical Impacts
The study identifies several AMR genes, including bla CTX-M-15, floR, and various tetracycline and sulfonamide resistance genes, highlighting the spread of multidrug-resistant bacteria in Nigeria's environment, food supply chain, and clinical settings.
Highly carbapenem-resistant Achromobacter xylosoxidans harboring bla(NDM-1) in Myanmar.
The study identifies bla(NDM-1), bla(OXA-114), and bla(PSE-1) as carbapenem resistance genes in Achromobacter xylosoxidans isolates from Myanmar, along with aminoglycoside modifying enzymes such as aac(6')-Ib, aph(6)-Id, aph(3'')-Ib, ant(4')-Iib, and aph(3')-VI.
Antibiotics Resistance Profile of Clinical Isolates of Pseudomonas aeruginosa Obtained from Farwaniya Hospital in Kuwait Using Phenotypic and Molecular Methods.
The study identified blaVEB, blaVIM, aac(6')-Ib, and qnrS as the most prevalent resistance genes in MDR P. aeruginosa isolates. Mutations in gyrA (Thr83Ile) and parC (Ser87Leu) were strongly associated with fluoroquinolone resistance.
Antechodynamics and Antechokinetics: Dynamics and Kinetics of Antibiotic Resistance Biomolecules.
This review discusses the dynamic and kinetic aspects of antibiotic resistance biomolecules, focusing on the mechanisms of resistance conferred by various genes and enzymes.
Multidrug-resistant Klebsiella pneumoniae ST70 harboring bla(NDM) in a migratory Penguin.
The study identifies multiple antimicrobial resistance genes in a multidrug-resistant Klebsiella pneumoniae ST70 isolate from a Magellanic Penguin, highlighting the potential of migratory penguins as vectors of antimicrobial-resistant microorganisms.
Plasmid diversity in Klebsiella pneumoniae ST307 co-producing KPC plus NDM recovered during the COVID-19 pandemic.
The study characterizes the plasmid diversity in Klebsiella pneumoniae ST307 isolates co-producing KPC and NDM carbapenemases, identifying multiple resistance genes and plasmid types involved in carbapenem resistance.
Comparative genomics of Pseudomonas paraeruginosa.
The study identifies various AMR genes and mutations in Pseudomonas paraeruginosa, including carbapenemases like blaVIM-2, blaVIM-6, blaVIM-28, and blaKPC-2, as well as efflux pump genes (mexAB-oprM, mexCD-oprJ, etc.), and mutations in oprD, mexS, mexR, mexZ, lasR, mvfR, and vqsM that contribute to antibiotic resistance.
Detection of the ST111 Global High-Risk Pseudomonas aeruginosa Clone in a Subway Underpass.
The study identifies the ST111 Pseudomonas aeruginosa clone in an urban water drain, highlighting its multidrug resistance profile with genes like aadA2, bla_OXA-10, sul1, and aac(6')-Ib, along with the bla_PDC-3 allele conferring enhanced resistance to certain carbapenems.
Fecal carriage of resistant Escherichia coli in livestock in Algeria: emergence of NDM and OXA-181.
The study identified the presence of 3GC-resistant E. coli in livestock in Algeria, with the detection of various resistance genes including bla CTX-M, bla NDM-1, bla OXA-181, bla CMY, tet A, aac(6')-Ib, and intI1. These genes contribute to resistance against multiple antibiotics, highlighting the need for monitoring and control strategies.
Whole-genome sequencing and bioinformatic tools powered by machine learning to identify antibiotic-resistant genes and virulence factors in Escherichia coli from sepsis.
The study identified several known and novel antibiotic-resistant genes in E. coli isolates from sepsis patients using whole-genome sequencing and machine learning. Key findings include the presence of blaCTX-M, blaSHV, blaTEM, aac(6')-Ib, aadA, qnrS1, ermB, mexAB-OprM, acrAB-TolC, and oqxAB genes, which confer resistance to various antibiotics.
Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome of very-low-birth-weight preterm infants.
Probiotic supplementation reduced the prevalence of antibiotic resistance genes (ARGs) and multidrug-resistant (MDR) pathogens in the gut of very-low-birth-weight preterm infants. The study also identified the colistin resistance gene mcr-9.1 and the aminoglycoside resistance gene aac6-aph2, demonstrating the potential for horizontal gene transfer of ARGs within the infant gut.
Cefiderocol-resistant pathogens in German hospital wastewater: a reservoir for multidrug resistance.
The study identifies multiple AMR genes, including bla NDM−1, bla VIM−1, bla OXA−48, and bla KPC−2, in cefiderocol-resistant isolates from German hospital wastewater, highlighting the presence of multidrug-resistant pathogens with diverse resistance mechanisms.
Isolation and Molecular Characterization of Three Staphylococcus pseudintermedius Strains from Dogs and Humans in Egypt.
Three Staphylococcus pseudintermedius isolates from dogs and humans in Egypt were characterized. The isolates showed resistance to various antibiotics, including penicillin, tetracycline, aminoglycosides, chloramphenicol, fusidic acid, macrolides, streptothricin, and trimethoprim. None of the isolates carried the mecA gene, which is associated with methicillin resistance.
The investigation of bacteria in the oral of Trichomonas gallinae infected pigeons and the antibiotic resistance analysis of Klebsiella pneumoniae clinical isolates from farm pigeons in Shandong Province of China.
The study identified multiple antibiotic resistance genes in Klebsiella pneumoniae isolates from farm pigeons in Shandong Province, including bla-SHV, bla-TEM, bla-CTX-M-9, qnrB, tetA, and aac(6')-Ib, highlighting the presence of multidrug-resistant strains.
Bridge nucleic acid/DNA gapmers as inhibitors of gene expression by multiple antisense mechanisms.
The study demonstrates that bridge nucleic acid (BNA) gapmers, particularly those containing LNA, can inhibit the expression of the aac(6')-Ib gene, which is responsible for aminoglycoside resistance. This inhibition occurs through multiple mechanisms, including RNase H and RNase P-mediated mRNA cleavage and steric hindrance.
Navigating an evolving microbial landscape: emerging antimicrobial resistance trends and precision stewardship in Tianjin tertiary hospitals (2021-2023).
The study identified significant trends in antimicrobial resistance (AMR) patterns among clinical isolates from hospitals in Tianjin, highlighting the increasing resistance of Klebsiella pneumoniae to various antibiotics, including carbapenems, and the notable decline in ceftazidime/avibactam resistance in E. coli. Additionally, it noted the emergence of resistance in Acinetobacter baumannii and Pseudomonas aeruginosa to several antimicrobials.
Unveiling community structure, antimicrobial resistance, and virulence factor of a wastewater sample of dairy farm located in mayurbhanj, odisha, india.
The study identified several antimicrobial resistance (AMR) genes in a dairy wastewater sample, including beta-lactamases, aminoglycoside acetyltransferases, tetracycline resistance proteins, quinolone resistance proteins, and macrolide ribosome methyltransferases. These genes were found in various bacterial species such as Escherichia coli, Staphylococcus aureus, Klebsiella pneumoniae, and Pseudomonas aeruginosa.
Insights into the Metabolic Adaptations of a Carbapenem-Resistant Klebsiella pneumoniae Strain on Exposure to Sublethal Concentrations of Ertapenem.
The study identified VIM-1, AAC(6')-Ib, APH(3')-Ia, ANT(3'')-Ia, Sul1, and DfrA1 as genes with significant differential abundance in a carbapenem-resistant K. pneumoniae strain exposed to sublethal concentrations of ertapenem, indicating their roles in antibiotic resistance.
Molecular characterization of extended spectrum beta lactamase producing Escherichia coli in two different wastewater treatment plants in Hatay Province, Türkiye.
The study identified several extended spectrum beta lactamase (ESBL) genes, including bla CTX-M, bla CTX-M-15, bla CTX-M-55, bla CTX-M-1, bla CTX-M-3, bla TEM, and bla CMY-2, in ESBL-producing Escherichia coli isolates from wastewater treatment plants in Hatay Province, Türkiye. Additionally, quinolone resistance genes such as aac(6)-Ib, qnrA, and qnrB, and disinfectant resistance genes like qacEΔ1, ydgE, ydgF, mdfA, emrE, sugE(c), and sugE(p) were also detected.
Genomic insights into ST85 and ST158 belonging to recently emerged global clones of multidrug-resistant Acinetobacter baumannii isolates from Egypt: in vitro assessment of repurposed drug-antibiotic combinations.
The study identified multiple antibiotic resistance genes, including blaOXA-23, aadA1, armA, aph(3')-VIa, aph(3')-Ia, and ant(3'')-IIa, in multidrug-resistant Acinetobacter baumannii isolates from Egypt.
Temporal dynamics of the resistome in gilts raised in an organic operation in which semen used for artificial insemination is the primary source of antimicrobial exposure.
The study identified several tetracycline, aminoglycoside, and MLS resistance genes in the fecal microbiome of gilts, with no significant increases in ARG abundance following exposure to semen extenders containing antibiotics.
An integrated phenotypic and genomic approach to characterize MBL-producing Enterobacterales strains circulating in a Sicilian transplant center.
The study characterizes MBL-producing Enterobacterales strains, identifying NDM-1, NDM-5, and VIM-1 as the most prevalent metallo-beta-lactamases. It also identifies various aminoglycoside, quinolone, and sulfonamide resistance genes, highlighting the multidrug-resistant nature of these isolates.
Genomic Characterization and Resistance Mechanisms of Carbapenem-Resistant Klebsiella pneumoniae ST101 Isolates from Saudi Arabia.
The study identifies bla_OXA-48 and bla_NDM-1 carbapenemase genes in CRKP ST101 isolates from Saudi Arabia, highlighting their role in carbapenem resistance and the complexity of resistance mechanisms in high-risk clones.
PanARGMiner (Pan-Genomic Antimicrobial Resistance Gene Miner): An advanced feature selection framework for extracting key resistance genes from pan-genomic datasets.
PanARGMiner effectively identifies key resistance genes from pan-genomic datasets, including both known and novel AMR genes, across multiple bacterial species.
Antibiotic contamination and antimicrobial resistance dynamics in the urban sewage microbiome in India.
The study identifies multiple antibiotic resistance genes (ARGs) in urban sewage samples from India, highlighting the presence of genes such as blaTEM, catB, aac(6')-Ib, sul1, ermB, dfrA1, mphA, sul2, blaOXA, blaCTX-M, and qnrS, which confer resistance to various antibiotic classes.
Bridge Nucleic Acid/DNA Gapmers as Potential Inhibitors of Bacterial Gene Expression by Multiple Antisense Mechanisms: An In Vitro Study.
The study demonstrates that LNA-containing gapmers can inhibit the expression of the aac(6′)-Ib gene, which is responsible for amikacin resistance in bacteria, through multiple antisense mechanisms.
Molecular resistance mechanisms to newly approved antibiotics (2017-2025) in WHO priority pathogens.
The paper reviews molecular resistance mechanisms to newly approved antibiotics in WHO priority pathogens, identifying various beta-lactamases, efflux pumps, and target site modifications that confer resistance.
Genetic organization of antibiotic resistance genes (aac(6')-Ib, aadA, and oxa9) in the multiresistance transposon Tn1331.
The study characterizes the genetic organization of three antibiotic resistance genes (aac(6')-Ib, aadA, and oxa9) within the multiresistance transposon Tn1331, demonstrating their transcriptional regulation and functional roles in conferring resistance to gentamicin, tobramycin, streptomycin, and ampicillin in Escherichia coli.
Aminoglycoside 6′-N-Acetyltransferase Variants of the Ib Type with Altered Substrate Profile in Clinical Isolates of Enterobacter cloacae and Citrobacter freundii.
The study identifies aac(6′)-Ib variants in clinical isolates of Enterobacter cloacae and Citrobacter freundii, which confer resistance to gentamicin and amikacin. These variants exhibit altered substrate profiles compared to typical aac(6′)-Ib enzymes.
Carbapenems as inhibitors of OXA-13, a novel, integron-encoded beta-lactamase in Pseudomonas aeruginosa.
Carbapenems as inhibitors of OXA-13, a novel, integron-encoded beta-lactamase in Pseudomonas aeruginosa.
Evidence of nosocomial infection in Japan caused by high-level gentamicin-resistant Enterococcus faecalis and identification of the pheromone-responsive conjugative plasmid encoding gentamicin resistance.
The study identifies a high-level gentamicin-resistant Enterococcus faecalis strain carrying a pheromone-responsive conjugative plasmid encoding gentamicin resistance, highlighting the role of plasmid-mediated resistance in nosocomial infections.
Use of molecular and reference susceptibility testing methods in a multicenter evaluation of MicroScan dried overnight gram-positive MIC panels for detection of vancomycin and high-level aminoglycoside resistances in enterococci.
The study evaluated the ability of MicroScan PM-8 panels to detect vancomycin resistance (VR) and high-level aminoglycoside resistance (HLAR) in enterococci, comparing them to reference methods. It identified and validated several AMR genes including vanA, vanB, vanC1, vanC2-3, ANT(6)-I, AAC(6')-Ib, and APH(2")-I.
No comments yet. Be the first to comment!