Browse AMR Genes
Explore antimicrobial resistance genes from the literature
Explore antimicrobial resistance genes from the literature
Antibiotic resistant tlyA
Overview
| Protein Change | Nucleotide Change | Mechanism | Organism | Resistance To | Database | Validation Status |
|---|---|---|---|---|---|---|
| Q22* | - | - | Mycobacterium tuberculosis | capreomycin|viomycincapreomycin | ReslitResFinder Database | Candidate |
| G116D | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| R18* | - | - | Mycobacterium tuberculosis | kanamycin|amikacin|capreomycincapreomycin | ReslitResFinder Database | Candidate |
| G232D | - | loss of methylation | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| L160W | - | - | Mycobacterium tuberculosis | amikacin|capreomycin | Reslit | Candidate |
| L118R | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| K89E | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| N236K | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosidesamikacin | ReslitResFinder DatabaseCard Database | Candidate | |
| L11L | - | - | Mycobacterium tuberculosis | capreomycinamikacin|kanamycin|capreomycinamikacin|capreomycin | Reslit | Candidate |
| E22* | - | - | - | capreomycin | Reslit | Candidate |
| V55V | - | - | - | capreomycin | Reslit | Candidate |
| L139V | - | - | - | capreomycin | Reslit | Candidate |
| T222S | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| A215P | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| G38S | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| G196E | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| M33R | - | - | Mycobacterium tuberculosis | capreomycin | Reslit | Candidate |
| A1408G | - | - | - | kanamycin | Reslit | Candidate |
| R3* | - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate |
| R14W | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| A67E | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| K69E | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| A91E | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| L118P | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| V128E | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| L150P | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| P183L | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| Q184* | - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate |
| F185L | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| E238K | - | single resistance variant | Mycobacterium tuberculosis | capreomycinaminoglycosides | ResFinder DatabaseCard Database | Candidate |
| R3Ter | - | nonsense mutation | Mycobacterium tuberculosis | aminoglycosides | Card Database | Candidate |
| K31fs | - | frameshift mutation | Mycobacterium tuberculosis | aminoglycosides | Card Database | Candidate |
| Q184Ter | - | nonsense mutation | Mycobacterium tuberculosis | aminoglycosides | Card Database | Candidate |
| R18Ter | - | nonsense mutation | Mycobacterium tuberculosis | aminoglycosides | Card Database | Candidate |
| Q22Ter | - | nonsense mutation | Mycobacterium tuberculosis | aminoglycosides | Card Database | Candidate |
| - | - | - | capreomycin | Reslit | Candidate | |
| - | - | - | amikacin|kanamycin|capreomycin | Reslit | Candidate | |
| - | - | - | amikacin|kanamycin|capreomycin | Reslit | Candidate | |
| - | - | - | amikacin|kanamycin|capreomycin | Reslit | Candidate | |
| - | - | - | amikacin|kanamycin|capreomycin | Reslit | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate | |
| - | - | Mycobacterium tuberculosis | capreomycin | ResFinder Database | Candidate |
| Allele | Database | Papers | Drug Classes | Organisms | Countries | Years | Sequence Accession | Protein Accession |
|---|---|---|---|---|---|---|---|---|
| Mtub_tlyA_CAP | Card Database | 1 | - | Mycobacterium tuberculosis H37Rv | - | - | NC_000962.3 | NP_216210.1 |
| tlyA | Reslit | 12 | capreomycin, viomycin +3 | Mycobacterium tuberculosis +7 | Siberia, Pakistan, Europe|France, India, global|Global, Brazil|Mato Grosso | 2012, 2014, 2018, 2021, 2022, 2023, 2025 | KY271751|KY287640 | - |
Capreomycin susceptibility is increased by TlyA-directed 2'-O-methylation on both ribosomal subunits.
The study identifies TlyA as a 2'-O-methyltransferase that methylates rRNA nucleotides C1409 and C1920, leading to increased capreomycin and viomycin susceptibility. TlyA orthologs are classified into two groups based on their substrate specificity.
Antimicrobial Resistance Mechanisms in Mycobacterium tuberculosis
The paper discusses the molecular mechanisms of drug resistance in Mycobacterium tuberculosis, focusing on genes like pncA, rspA, erm37, tlyA, eis, BlaC, mfpA, IniBAC, EfP, and Tap, which are involved in resistance to pyrazinamide, macrolides, lincosamides, capreomycin, viomycin, kanamycin, β-lactams, fluoroquinolones, isoniazid, ethambutol, and multiple antibiotics.
Molecular characterization of amikacin, kanamycin and capreomycin resistance in M/XDR-TB strains isolated in Thailand.
Characterization of extensively drug-resistant Mycobacterium tuberculosis isolates circulating in Siberia.
The study identified multiple mutations in genes associated with drug resistance in extensively drug-resistant Mycobacterium tuberculosis isolates from Siberia, including rpoB, katG, rrs, gidB, rpsL, and gyrA.
Antimicrobial Resistance Mechanisms in Mycobacterium tuberculosis: Role of Efflux Pumps and Mutations
The study identified several AMR genes and mutations in M. tuberculosis, including rrs A1401G, katG S315T, inhA C-15T, rpoB D516Y, gyrA A90V, tlyA insertion, and eis G-10A, which contribute to resistance against various antibiotics such as isoniazid, rifampicin, amikacin, capreomycin, and ofloxacin.
Comparative Genome Analysis of 2 Mycobacterium Tuberculosis Strains from Pakistan: Insights Globally Into Drug Resistance, Virulence, and Niche Adaptation.
The study identified drug-resistant genes such as katG, inhA, fabG, rpoA, rpoB, rpoC, embA, embB, embC, ethA, gyrA, gyrB, tlyA, and gidB in Mycobacterium tuberculosis strains mnpk and swlpk, indicating resistance to isoniazid, rifampicin, ethambutol, ethionamide, ofloxacin, capreomycin, and streptomycin.
Performance Evaluation of GeneLEAD/Deeplex Myc-TB for Mycobacterium tuberculosis Complex Diagnosis and Drug Susceptibility Testing
The study evaluates the performance of the GeneLEAD VIII and Deeplex Myc-TB assay for detecting drug resistance in Mycobacterium tuberculosis complex. It identifies several AMR genes and mutations associated with resistance to various antituberculous drugs.
Molecular Epidemiology and Polymorphism Analysis in Drug-Resistant Genes in M. tuberculosis Clinical Isolates from Western and Northern India.
The study identified several mutations in the rrs, eis, whiB7, tlyA, and gyrA genes associated with resistance to kanamycin, capreomycin, and ofloxacin in Mycobacterium tuberculosis clinical isolates from western and northern India.
Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms.
The study identified several novel resistance mechanisms in Mycobacterium tuberculosis through genome-wide association studies, including new genes and mutations associated with resistance to various antimicrobials such as ethambutol, isoniazid, amikacin, kanamycin, ethionamide, levofloxacin, rifabutin, clofazimine, delamanid, and linezolid.
Genomic analysis of Mycobacterium tuberculosis variant bovis strains isolated from bovine in the state of Mato Grosso, Brazil.
The study identified multiple AMR genes and mutations in Mycobacterium tuberculosis variant bovis strains from Mato Grosso, Brazil, including resistance to pyrazinamide, isoniazid, rifampicin, streptomycin, ethambutol, ethionamide, fluoroquinolones, kanamycin, capreomycin, paraminosalicylic acid, cycloserine, bedaquiline, linezolid, and delamanid.
Selection of Multi-Drug Targets against Drug-Resistant Mycobacterium tuberculosis XDR1219 Using the Hyperbolic Mapping of the Protein Interaction Network.
The study identifies several drug targets (DTs) in Mycobacterium tuberculosis XDR1219 using hyperbolic mapping of the protein interaction network. Key DTs include rpsA, rpsL, embB, embA, fbiC, fbiB, rpoB, dnaK, rpoA, rpoC, rpoZ, ddl, alr, pbpB, rplD, rplC, rmlC, Isr2, tlyA, pknB, dprE1, fas, accD1, accE5, Rv0200, galE3, pks5, msl3, phoP, dacB2, pknI, echA19, ltp3, and Rv3520c, which are involved in various metabolic pathways and are targeted by different antibiotics.
Microevolutionary models and multi-omics analysis uncover the cross-drug resistance characteristics of capreomycin-selected Mycobacterium tuberculosis.
The study identifies tlyA mutations (Gly232Asp and Trp120fs) and eis promoter variant (c.−14c>t) as key contributors to capreomycin resistance in Mycobacterium tuberculosis. Additional mutations in rpmA (Gln19Arg) and mmaA2 (Ala48Val) are linked to cross-resistance.
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